View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10205_low_4 (Length: 411)
Name: NF10205_low_4
Description: NF10205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10205_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 42435215 - 42434812
Alignment:
| Q |
1 |
attagaaaatgttgaaagtgagggtgaaaaatcaatgtatagaaagttaaattgaaaaagggtaaaactaggatttttt--aatttgtatttttaattgt |
98 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||| ||||| ||||||||||||| |
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| T |
42435215 |
attagaaaatgttgaaagtgatggtgaaaaatcaatgtatataaagttaaattgaaaaagagtaaaatt-ggatttttttaaatttttatttttaattgt |
42435117 |
T |
|
| Q |
99 |
acgggtgaaagtacatatgtaggggtatattgcaaaatttccactatacaacttacnnnnnnnnggactacggttaacctaagcccatacagtaggccta |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42435116 |
gcgggtgaaagtacatatgtaggggtatatcacaaaatttccactatacaacttacttttttttggactacggttaacctaagcccatacagtaggccta |
42435017 |
T |
|
| Q |
199 |
aatagcctaagttgtttctgtaaccctaaataaatacattgttgccgcaccacatctttcttcatcattctctcttccattgttctcttatttctctgca |
298 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42435016 |
aatagcctaagttatttctgtaaccctaaataaatacattgctgccgcaccacatctttcttcatcattctctcttccattgttcgcttatttctctgca |
42434917 |
T |
|
| Q |
299 |
tcatttatcatgtcgatcattcacacatccattgttttcttctctctttcatcctatctcctgtcgatcctctctctgcttcttctatttgtctcataca |
398 |
Q |
| |
|
||||||||||| || ||| || |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
42434916 |
tcatttatcatatcaatccttgacacctccattgttttcttctctctttcatcctatctactatcgatcctctctctgcttcttctatttgtatcataca |
42434817 |
T |
|
| Q |
399 |
cctat |
403 |
Q |
| |
|
||||| |
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|
| T |
42434816 |
cctat |
42434812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 28293665 - 28294048
Alignment:
| Q |
1 |
attagaaaatgttgaaagtgagggtgaaaaatcaatgtatagaaagttaaattgaaaaagggtaaaactaggattttttaatttgtatttttaattgtac |
100 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||| ||| ||| |
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| T |
28293665 |
attagaaaatgttgaaagcgatggtgaaaaatcaatgtatagaaacttaaattgtaaaagggtaaa-cttggatttttttttttttat------------ |
28293751 |
T |
|
| Q |
101 |
gggtgaaagtacatatgtaggggtatattgcaaaatttccactatacaacttacnnnnnnnnggactacggttaacctaagcccatacagtaggcctaaa |
200 |
Q |
| |
|
||||| | ||||||||||||| | |||||||| |||||||||| ||| ||| ||||||| ||||||||||||||| |||| ||| |
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| T |
28293752 |
-ggtga-------tttgtaggggtatatcgtaaaatttcaactatacaacatactttttttttaacttcggttaatctaagcccatacagtgggcccaaa |
28293843 |
T |
|
| Q |
201 |
tagcctaagttgtttctgtaaccctaaataaatacattgttgccgcaccacatctttcttcatcattctctcttccattgttctcttatt--tctctgca |
298 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |
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| T |
28293844 |
tagcctatgttgtttctgtaaccctaaataaatacattcctgccgcaccacatctttcttcatcaatctctcttccattgttctcttctttctctctgca |
28293943 |
T |
|
| Q |
299 |
tcatttatcatgtcgatcattcacacatccattgttttcttctctcttt-catcctatctcctgtcgatcctctctc-tgcttcttctatttgtctcata |
396 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||||||||| ||||| |||||||||| || |||| |||||||| |||||||||||||||| ||||| |
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|
| T |
28293944 |
tcatttattatgtcgatccttcacacctccattgttttcttctttctttgcatcctatcttctctcgaccctctctcatgcttcttctatttgtatcata |
28294043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 8390342 - 8390218
Alignment:
| Q |
174 |
aacctaagcccatacagtaggcctaaatagcctaagttgtttctgtaaccctaaataaatacattgttgccgcaccacatct---ttcttcatcattctc |
270 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||| |||||| |||| ||||||||||||||||| || |||||| ||||||| ||||||||| ||||| |
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|
| T |
8390342 |
aacctaagtccatacattaggcccaaatagcttaagttatttcggtaaccctaaataaatatgatgccgccgcaacacatcttcgttcttcatctttctc |
8390243 |
T |
|
| Q |
271 |
tcttccattgttctcttatttctct |
295 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
8390242 |
cattccattgttctcttctttctct |
8390218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 11432839 - 11432778
Alignment:
| Q |
7 |
aaatgttgaaagtgagggtgaaaaatcaatgtatagaaagttaaattg-aaaaagggtaaaa |
67 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| ||||| | ||||||||||||| |
|
|
| T |
11432839 |
aaatgttgaaagtgagggtgaaaaattaatgtataaaaagctaaatagcaaaaagggtaaaa |
11432778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 52120507 - 52120555
Alignment:
| Q |
11 |
gttgaaagtgagggtgaaaaatcaatgtatagaaagttaaattgaaaaa |
59 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||| ||| |||||| |
|
|
| T |
52120507 |
gttgaaagtgagggtgaaaaataaatgtgtaaaaagttcaatggaaaaa |
52120555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 40040041 - 40039980
Alignment:
| Q |
6 |
aaaatgttgaaagtgagggtgaaaaatcaatgtatagaaagttaaattg-aaaaagggtaaaa |
67 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| |||||| | ||||||||||||| |
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|
| T |
40040041 |
aaaatgttgaaagtgagggtgaaaaattaatgtata-aaacttaaatagtaaaaagggtaaaa |
40039980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 27823432 - 27823370
Alignment:
| Q |
330 |
ttgttttcttctctctttcatcctatctcctgtcgatcctctctctgcttcttctatttgtctc |
393 |
Q |
| |
|
|||||||||||||||| |||||| ||| || | |||||||||||||||||||||||| ||||| |
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|
| T |
27823432 |
ttgttttcttctctctg-catcctttcttctcttgatcctctctctgcttcttctattggtctc |
27823370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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