View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10205_low_5 (Length: 399)
Name: NF10205_low_5
Description: NF10205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10205_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 28 - 383
Target Start/End: Complemental strand, 2330201 - 2329846
Alignment:
| Q |
28 |
aactatgaatgaaaataactattcggatttctagaattaattctcaacagaaaattgaaacagttttgtttagcttgaataggtatgaggttggtggtag |
127 |
Q |
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| T |
2330201 |
aactatgaatgaaaataactatttggatttctacaaataattctcaacagacaattgaaacagttttgtttagcttgaataggtatgaggacggtggtag |
2330102 |
T |
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| Q |
128 |
ctttttaattacctgatttggaaaatagcatgcagaagaaaaagatgaaaagcacagtgattattgttgcaagtttgagtccatgtagatgataggatct |
227 |
Q |
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| T |
2330101 |
ctttttaattacctgatttggaaaatagcatgcagaagaaaaagatgaaaagcacagtgattattgttgcaagtttgagtccatgtagatgataggatct |
2330002 |
T |
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| Q |
228 |
agcaggtggagccatcaatgagagaattaggattgatgcaagtaagtaacagtgaagaggtgtttgagaaaataatgaagaaatgttagaagcagtgaaa |
327 |
Q |
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| T |
2330001 |
agcaggtggagccatcaatgagagaattaggattgatgcaagtaagtaacagtgaagaggtgtttgagaaaataatgaagaaatgttagaagcagtgaaa |
2329902 |
T |
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| Q |
328 |
gggatggatgtgtgtaagatgaaatgtgttgtgatggaaatgaagatattttaaat |
383 |
Q |
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| T |
2329901 |
gggatggatgtgtgtaagatgaaatgtgttgtgatggaaatgaagagattttaaat |
2329846 |
T |
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