View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10206_low_2 (Length: 503)
Name: NF10206_low_2
Description: NF10206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10206_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 26489747 - 26489266
Alignment:
| Q |
16 |
aatacttacgagtcactaaaagggtagattacataacgtccatcctgtttttccacttcttcttgcaactgatgtgcttgttgcataggatctgcttcct |
115 |
Q |
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| T |
26489747 |
aatacttacgagtcactaaaaaggtagattacataacgtccatcctgtttttccacttcttcttgaaactgatgtgcttgttgcataggatctgcttctt |
26489648 |
T |
|
| Q |
116 |
ctcgctgttgctgctgctgctcatcgggtactacctcaggcacgatcgaaggttgtgtggtgggaggaggtagtgtagagaacggagtagtaatattctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26489647 |
ctcgctgttgctgctgctgctcatcgggtactacctcaggcacgatcgaaggttgtgtggtgggaggaggtagtgtagagaacggagtagtaatattctc |
26489548 |
T |
|
| Q |
216 |
cggtgaatgtgtagataatgaagtagtaactccatgagtaatcattgcaggattcggaataggccacggaaaaggggtactataaagaggtggatccgat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26489547 |
cggtgaatgtgtagataatgaagtagtaactccatgagtaaccattgcaggattcggaataggccacggaaaaggggtactataaagaggtggagccgat |
26489448 |
T |
|
| Q |
316 |
gaagaatccttgacacgaggtatccaaaacggaggaggaggaataagatgtctacactcagcttctgtaa-----------gtacaatatttcgtatttt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26489447 |
gaagaatccttgacacgaggtatccaaaacggaggaggaggaacaagttgtctacactcagcttctgtaagtactctgtaagtacaatatttcgtatttt |
26489348 |
T |
|
| Q |
405 |
ttagaggtttacgaggctctagtggtctcttaccacactctgtaagtactctattggcataagcgcggatatcatgaataac |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26489347 |
ttagaggtttacgaggctctagtggtctcttaccacactctgtaagtactctattggcataagcgcggatatcatgaataac |
26489266 |
T |
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