View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10206_low_3 (Length: 493)
Name: NF10206_low_3
Description: NF10206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10206_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 35840486 - 35840954
Alignment:
| Q |
18 |
tgaagcatactcagccacacaaatcattgatgctgatattacttacagaagtaatttcatatgcacctggcctctcaaccttgaagcctatatgccttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35840486 |
tgaagcatactcagccacacaaatcattgatgctgatattacttacagaagtaatttcatatgcacctggcctctcaaccttgaagcctatatgccttga |
35840585 |
T |
|
| Q |
118 |
atcaccatctcctatcaaaatgattggttttgtttccaaagtgataaaactccttgttaatcttgtgcatattgaaacaaatacttaaaaagtggctaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35840586 |
atcaccatctcctatcaaaatgattggttttgtttccaaagtgataaaactccttgttaatcttgtgcatattgaaacaaatacttaaaaagtggttaat |
35840685 |
T |
|
| Q |
218 |
tgagggagtcctatttgtagtaatatcatgaaggattgagctcatttatctactcaatcaagataaggaaaatggtaaagtctgcaattgtagatattaa |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35840686 |
tgagggagtcttatttgtagtaatatcatgaaggattgagctcatttatctactcaatcaagataaggaaaatggtaaagtctgcaattgtagatattaa |
35840785 |
T |
|
| Q |
318 |
ttttaacaagttttcaattgttgcttgtagcttttaatttctagatatgattgaagaagaaagtgtaactaaccaactggttcaagaatccatctttgtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35840786 |
ttttaacaagttttcaattgttgcttgtagcttttagtttctagatatgattgaagaagaaagtgtaactaaccaactggttcaagaatccatctttgtg |
35840885 |
T |
|
| Q |
418 |
tagcagttgttgttggagttgtagcttttgatgcatgtatagctcctaggttcaccttttcctatgctt |
486 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35840886 |
tagtagttgttgttggagttgtagcttttgatgcatgtatagctcctaggttcaccttttcctgtgctt |
35840954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 35897203 - 35897671
Alignment:
| Q |
18 |
tgaagcatactcagccacacaaatcattgatgctgatattacttacagaagtaatttcatatgcacctggcctctcaaccttgaagcctatatgccttga |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35897203 |
tgaagcatactcagccacacaaatcattgatgctgatattacttacagaagtaatttcatatgcacctggcctctcaaccttgaagcctatatgccttga |
35897302 |
T |
|
| Q |
118 |
atcaccatctcctatcaaaatgattggttttgtttccaaagtgataaaactccttgttaatcttgtgcatattgaaacaaatacttaaaaagtggctaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35897303 |
atcaccatctcctatcaaaatgattggttttgtttccaaagtgataaaactccttgttaatcttgtgcatattgaaacaaatacttaaaaagtggttaat |
35897402 |
T |
|
| Q |
218 |
tgagggagtcctatttgtagtaatatcatgaaggattgagctcatttatctactcaatcaagataaggaaaatggtaaagtctgcaattgtagatattaa |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35897403 |
tgagggagtcttatttgtagtaatatcatgaaggattgagctcatttatctactcaatcaagataaggaaaatggtaaagtctgcaattgtagatattaa |
35897502 |
T |
|
| Q |
318 |
ttttaacaagttttcaattgttgcttgtagcttttaatttctagatatgattgaagaagaaagtgtaactaaccaactggttcaagaatccatctttgtg |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35897503 |
ttttaacaagttttcaattgttgcttgtagcttttagtttctagatatgattgaagaagaaagtgtaactaaccaactggttcaagaatccatctttgtg |
35897602 |
T |
|
| Q |
418 |
tagcagttgttgttggagttgtagcttttgatgcatgtatagctcctaggttcaccttttcctatgctt |
486 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
35897603 |
tagtagttgttgttggagttgtagcttttgatgcatgtatagctcctaggttcaccttttcctgtgctt |
35897671 |
T |
|
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