View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10206_low_4 (Length: 326)
Name: NF10206_low_4
Description: NF10206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10206_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 1357823 - 1358136
Alignment:
| Q |
1 |
caagaaaatctcaatgaattagctcttgggattgagaattctaaattacctttcttttgggttttgagagatttgaaaaatggttttgctgagttaccaa |
100 |
Q |
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| T |
1357823 |
caagaaaatctcaatgaattagctcttgggattgagaattctaaattacctttcttttgggttttgagagatttgaaaaatggttttgttgagttaccaa |
1357922 |
T |
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| Q |
101 |
atgggtttgaggataggacaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgac |
200 |
Q |
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| T |
1357923 |
atgggtttgaggataggacaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgac |
1358022 |
T |
|
| Q |
201 |
tcattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagagtaatg |
300 |
Q |
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| T |
1358023 |
tcattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagagtaatg |
1358122 |
T |
|
| Q |
301 |
caagagaagaaagt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
1358123 |
caagagaagaaagt |
1358136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 295
Target Start/End: Original strand, 20492824 - 20493001
Alignment:
| Q |
118 |
acaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgactcattgtggttcaggtt |
217 |
Q |
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| T |
20492824 |
acaaaagaatatggaatcgtttggaaaacatgggcaccacagctaaagatcttagctcatggatcaattggtggatgtatgagtcattgtggttcaggtt |
20492923 |
T |
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| Q |
218 |
caatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagag |
295 |
Q |
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| T |
20492924 |
cagtcattgagaagcttcattttgggcatgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagag |
20493001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 1355197 - 1355289
Alignment:
| Q |
162 |
taagatcttaggtcatggttcagttggtggttgtttgactcattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgt |
254 |
Q |
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| T |
1355197 |
taagatcttagctcatggagcaattggtggatgtatgagtcattgtggttctggttctgttattgaaaaggttcattttggccatgttcttgt |
1355289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 254
Target Start/End: Original strand, 29954677 - 29954825
Alignment:
| Q |
106 |
tttgaggataggacaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgactcatt |
205 |
Q |
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|||||||| || |||||||| ||| || || ||||||| ||||| || |||| ||||||||||| |||||| ||| ||||||| ||| ||| ||||| |
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| T |
29954677 |
tttgaggaaagaacaaaagaatgtggaatcgtttggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtggatgtatgagtcatt |
29954776 |
T |
|
| Q |
206 |
gtggttcaggttcaatgatagaaaatctttattttggacatgttcttgt |
254 |
Q |
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| T |
29954777 |
gtggttcaggttcagtcattgagaagcttcattttgggcatgtccttgt |
29954825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 315
Target Start/End: Original strand, 11531990 - 11532199
Alignment:
| Q |
106 |
tttgaggataggacaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgactcatt |
205 |
Q |
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|||||||| || |||||||| | ||| || || ||||||| ||||| ||||||| ||||||||||| ||||| ||| | ||||| ||| ||| ||| | |
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| T |
11531990 |
tttgaggaaagaacaaaagaacgtggaattgtttggaaaacatgggcaccacaacttaagatcttagcacatggatcaatcggtggatgtatgagtcact |
11532089 |
T |
|
| Q |
206 |
gtggttcaggttcaatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagagtaatgcaaga |
305 |
Q |
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|||||||||||||| | || || || ||| ||||||| |||| |||||| | ||||||| |||| | || ||| ||||| ||||||||| | |||| |
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| T |
11532090 |
gtggttcaggttcagtcattgagaagcttcattttgggcatgctcttgtgacattgccttatttaattgaccaatgtttgttctcaagagtactagaaga |
11532189 |
T |
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| Q |
306 |
gaagaaagtg |
315 |
Q |
| |
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||||||||| |
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| T |
11532190 |
aaagaaagtg |
11532199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 315
Target Start/End: Original strand, 14589156 - 14589309
Alignment:
| Q |
162 |
taagatcttaggtcatggttcagttggtggttgtttgactcattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgttatgttg |
261 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||| |||||||||||||| || ||||| | | |||| |||||| |||| ||||||||||| | ||| |
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| T |
14589156 |
taagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcatgttcttgtgacattg |
14589255 |
T |
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| Q |
262 |
ccttttttattggatcaagctttgtattcaagagtaatgcaagagaagaaagtg |
315 |
Q |
| |
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|||| |||| | || ||| ||||| | |||||||| | |||| ||||||||| |
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| T |
14589256 |
ccttatttacttgaccaatgtttgtttgcaagagtactagaagaaaagaaagtg |
14589309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 295
Target Start/End: Original strand, 12846750 - 12846844
Alignment:
| Q |
201 |
tcattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagag |
295 |
Q |
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||||||||||||||||||| | || || || || ||||||||||||||||||||| ||||||| ||| | |||||| ||||| |||||||| |
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| T |
12846750 |
tcattgtggttcaggttcagtcattgagaagctccattttggacatgttcttgttacattgccttatttgctagatcaatgtttgttttcaagag |
12846844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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