View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10206_low_7 (Length: 250)
Name: NF10206_low_7
Description: NF10206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10206_low_7 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 4157184 - 4157419
Alignment:
| Q |
5 |
ctcgtcttcattcaatgcttggtagataaggaagaggattttgtttgtctctctttcttgaatccttcaaaatgtcaatctt-gcttgagttaaggaatc |
103 |
Q |
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| T |
4157184 |
ctcgtcttcattcaatgcttggtagataaggaagaggattttgtttgtctctctttcttgaatccttcaaaatgtcaatctttgcttgagttaaggaatc |
4157283 |
T |
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| Q |
104 |
ctcatgacaatattccttataacctttttcaagaacctcccaaacatcatgtgctctaagaagaacctccattttgatacatccattatcataagtactc |
203 |
Q |
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| T |
4157284 |
ctcatgacaatattccttataacctttttcaagaacctccaaaacatcatgtgctctaagaagaacctccattttgatacatctattatcataagtactc |
4157383 |
T |
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| Q |
204 |
ccttgagaaatggaacttagaaggatgccgcttcat |
239 |
Q |
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| T |
4157384 |
ccttgagaagtggaacttagaaggatgccgcttcat |
4157419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 792 - 1027
Alignment:
| Q |
1 |
cgaactcgtcttcattcaatgcttggtagataaggaagaggattttgtttgtctctctttcttgaatccttcaaaatgtcaatct-tgcttgagttaagg |
99 |
Q |
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||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||||||||||||||||| |||| | | ||||| |||||||| |
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| T |
792 |
cgaactcatcttcatccaatgcttggtagatgaggaagagagcctt-tttgtctctctttcttgaatccttcaaagtgtctctttgtgctttagttaagg |
890 |
T |
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| Q |
100 |
aatcctcatgacaatattccttataacctttttcaagaacctcccaaacatcatgtgctctaagaagaacctccattttgatacatccattatcataagt |
199 |
Q |
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| T |
891 |
aatcctcatcttgtgattccttatagcctttttcaacaacctcccaaacatcatgtgctccaagaagagccatcattttgatgaagcaattatcataggt |
990 |
T |
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| Q |
200 |
actccc-ttgagaaatggaacttagaaggatgccgct |
235 |
Q |
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| T |
991 |
actccctttgagaagtggaacttggaaggatgccgct |
1027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 12074575 - 12074486
Alignment:
| Q |
147 |
acatcatgtgctctaagaagaacctccattttgatacatccattatcataagtactccc-ttgagaaatggaacttagaaggatgccgct |
235 |
Q |
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| T |
12074575 |
acatcatgtgctccaagaagagccatcattttgatgcaccaattatcataggtactccctttgagaagtggaacttagaaggatgccgct |
12074486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 18008666 - 18008786
Alignment:
| Q |
115 |
attccttataacctttttcaagaacctcccaaacatcatgtgctctaagaagaacctccattttgatacatccattatcataagtact-cccttgagaaa |
213 |
Q |
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| T |
18008666 |
attccttatagcctttttgaacaacctctaaaacatcatctgctccatggagagcctttattttgatgcaccaattatcataagtactccccttaagaag |
18008765 |
T |
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| Q |
214 |
tggaacttagaaggatgccgc |
234 |
Q |
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| T |
18008766 |
tgtaacttagacggatgccgc |
18008786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 11577274 - 11577246
Alignment:
| Q |
49 |
ttgtctctctttcttgaatccttcaaaat |
77 |
Q |
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| T |
11577274 |
ttgtctctctttcttgaatccttcaaaat |
11577246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 3507537 - 3507456
Alignment:
| Q |
153 |
tgtgctctaagaagaacctccattttgatacatccattatcataagtactccct-tgagaaatggaacttagaaggatgccg |
233 |
Q |
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| T |
3507537 |
tgtgctctaagaagagccttcattttaatgcaccaattatcataggtactccctgtgagaagttgaacttggaaggatgccg |
3507456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 7029953 - 7029880
Alignment:
| Q |
3 |
aactcgtcttcattcaatgcttggtagataaggaagaggattttgtttgtctctctttcttgaatccttcaaaat |
77 |
Q |
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| T |
7029953 |
aactcatcttcatacaatgcttggtagaagaggaag-ggagctttcttgcctctctttcttgaatccttcaaaat |
7029880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 2655323 - 2655244
Alignment:
| Q |
116 |
ttccttataacctttttcaagaacctcccaaacatcatgtgctctaagaagaacctccattttgatacatccattatcat |
195 |
Q |
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| T |
2655323 |
ttccttatagcctttctaaacaacgtcctaaacatcctgtgctttcagaagagccttcattttgatacatcaattatcat |
2655244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 11894344 - 11894382
Alignment:
| Q |
127 |
ctttttcaagaacctcccaaacatcatgtgctctaagaa |
165 |
Q |
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| T |
11894344 |
ctttttgaacaacctcccaaacatcatgtgctctaagaa |
11894382 |
T |
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