View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_high_11 (Length: 384)
Name: NF10207_high_11
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 2150912 - 2151267
Alignment:
| Q |
20 |
cccacacatgaaacactttatttaacatttttatgaataactgcacgaggagtcctttactcgatcagatttttggacatagaatattgttttaaaatca |
119 |
Q |
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| T |
2150912 |
cccacacatgaaacactttatttaacatttttatgaataactgcacgaggagtcctttactcgataagatttttggacatagaatattgttttaaaatca |
2151011 |
T |
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| Q |
120 |
gaaatttagacttacttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcagctccttc |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151012 |
gaaatttagactcacttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcagctccttc |
2151111 |
T |
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| Q |
220 |
ttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcctacgtgaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2151112 |
ttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcctatgtgaa |
2151211 |
T |
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| Q |
320 |
ataattcgaaggctcgagcaaaatccttgacagtgacaaagttataaggttcatct |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151212 |
ataattcgaaggctcgagcaaaatccttgacagtgacaaagttataaggttcatct |
2151267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 133 - 375
Target Start/End: Original strand, 2163303 - 2163545
Alignment:
| Q |
133 |
acttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcagctccttcttgttaatcccat |
232 |
Q |
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| T |
2163303 |
acttgagtgactttgaaaatgtggacaaacgaatttcgcttcataagcaaaaattctctgctagcacaagccttcagaagctccttcttgttaacaccgt |
2163402 |
T |
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| Q |
233 |
atttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcctacgtgaaataattcgaaggc |
332 |
Q |
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||||||||||| |||||||| ||| ||| |||| ||||||||||| |||| ||| ||||| |||||||||| || |||| |||||||| | || || |
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| T |
2163403 |
atttctttgtggtcaagacacttgcatggcatttcgacttgtcaaaaggattggctagctcatctccaagtttttgacctatgtgaaatatctgaaatgc |
2163502 |
T |
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| Q |
333 |
tcgagcaaaatccttgacagtgacaaagttataaggttcatct |
375 |
Q |
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| T |
2163503 |
ttcggcaaaatccttgacagtaacaaaactataaggttcatct |
2163545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 304
Target Start/End: Complemental strand, 4302604 - 4302471
Alignment:
| Q |
171 |
cttcataagcaataactctctgctagcacaagcccttagcagctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagac |
270 |
Q |
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|||||||||||| || ||| | |||||||||||| | || ||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||||||| |
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| T |
4302604 |
cttcataagcaaaaattctatactagcacaagccttcagaagctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagat |
4302505 |
T |
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| Q |
271 |
ttgtcaaatggatcggccagctcttctccaagtt |
304 |
Q |
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|| ||||| |||| ||| ||||| |||||||||| |
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| T |
4302504 |
ttttcaaaaggattggctagctcatctccaagtt |
4302471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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