View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10207_high_12 (Length: 375)

Name: NF10207_high_12
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10207_high_12
NF10207_high_12
[»] chr4 (2 HSPs)
chr4 (1-359)||(55336075-55336433)
chr4 (19-356)||(55330646-55330977)
[»] chr2 (20 HSPs)
chr2 (43-208)||(8431120-8431285)
chr2 (38-328)||(8375855-8376139)
chr2 (38-328)||(8405747-8406034)
chr2 (38-192)||(8439094-8439248)
chr2 (38-213)||(8411976-8412151)
chr2 (38-213)||(8434074-8434249)
chr2 (38-192)||(8395538-8395692)
chr2 (41-195)||(8417212-8417366)
chr2 (283-342)||(8403777-8403836)
chr2 (283-346)||(8368100-8368163)
chr2 (283-346)||(8401247-8401310)
chr2 (283-346)||(8422824-8422887)
chr2 (283-328)||(8411867-8411912)
chr2 (283-328)||(8431018-8431063)
chr2 (283-328)||(8433965-8434010)
chr2 (65-154)||(8403959-8404048)
chr2 (283-324)||(8416952-8416993)
chr2 (252-328)||(8395749-8395825)
chr2 (73-189)||(8417081-8417197)
chr2 (298-342)||(8429632-8429676)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 55336433 - 55336075
Alignment:
1 aaatgctgaagaaagcaagaagaggaaaaatagtaaaaatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55336433 aaatgctgaagaaagcaagaagaggaaaaatagtaaaaatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaa 55336334  T
101 gacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55336333 gacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggtt 55336234  T
201 ctgcatttgtaggaaacgacgaaggattttggtcagctatggttcctgtgatggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggaca 300  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55336233 ctgcatttgtaggaaacgacgacggattttggtcagctatggtacctgtgatggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggaca 55336134  T
301 agttggtatggtgtttgaaatgtatagaaactgtggtggattctttaagatgttgggag 359  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
55336133 agttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggag 55336075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 55330977 - 55330646
Alignment:
19 gaagaggaaaaatagtaaaaatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgag 118  Q
    ||||| |||||||||||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||||| || |  ||||| |||||||| |||||     
55330977 gaagaagaaaaatagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaa 55330878  T
119 agacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaacg 218  Q
    |||||||||||||||||||| ||| |||| |||||| | ||||  || |||||||||||||||||||||||||| ||||||||||||||||||||||||     
55330877 agacttggaaatatagcattaaaggttaataagagtttagcaactgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaac- 55330779  T
219 acgaaggattttggtcagctatggttcctgtgatggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttga 318  Q
       ||   | |||  ||||||| ||| || | ||||| || ||| | | |  || | | |||| |||||| |||||||||||| |||||||||| |||||    
55330778 ---aattctgttg--cagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttga 55330684  T
319 aatgtatagaaactgtggtggattctttaagatgttgg 356  Q
    |||||||||||| |||||||||||| ||||| ||||||    
55330683 aatgtatagaaattgtggtggattccttaagctgttgg 55330646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 208
Target Start/End: Complemental strand, 8431285 - 8431120
Alignment:
43 atggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaag 142  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||  ||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||||    
8431285 atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag 8431186  T
143 attaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgcattt 208  Q
     | ||||||||| ||||||| ||||| ||||||||| | ||||||||||| ||||| ||| |||||    
8431185 gtaaacaagagtttggcaattgcagggccattactctcaggaattgcagctataggatctacattt 8431120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 328
Target Start/End: Original strand, 8375855 - 8376139
Alignment:
38 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 137  Q
    ||||| |||||| ||||||| ||||||||||||||||||||| |||||||  ||||||| ||||||  |||||| ||||| ||||||||||| |||||||    
8375855 aatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcat 8375954  T
138 tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaacgacgaaggattttggtcagc 237  Q
    ||||| | ||||||||| ||||||| ||||| ||||| ||||| ||||||||||| || || ||  |||||||||| |  |      | | || | | ||    
8375955 tgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatcgacatttgtaggtagtg------gttctttggctgc 8376048  T
238 tatggttcctgtgatggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 328  Q
    | | |||||| |  |||| || ||| |||||| || ||| |||  |||||||||||||||||||||||| ||||| |||||||||||||||    
8376049 ttttgttcctcttttggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 328
Target Start/End: Complemental strand, 8406034 - 8405747
Alignment:
38 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 137  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| || |||||  | ||||||  |||||| ||||| ||||||||||| ||||| |    
8406034 aatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatagctt 8405935  T
138 tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaacgacgaaggattttggtcagc 237  Q
    ||||| | ||||||||| ||||||| ||||| ||||| ||||| ||||||||||| || || ||| ||||| | || || |  | ||   ||||| | ||    
8405934 tgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggcaatg--gtagttctttgg-ctgc 8405838  T
238 tatggttcctgtgatggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 328  Q
      | |||||| |  |||| || ||| |||||| ||||||||||  |||||| ||||||||||||||||| ||||| |||||||||||||||    
8405837 atttgttcctctcttggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 8439248 - 8439094
Alignment:
38 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 137  Q
    ||||| |||||| ||||||| ||||||||||||||||||||| |||||||  ||||||| ||||||  |||||| ||||| ||||||||||| |||||||    
8439248 aatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcat 8439149  T
138 tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagc 192  Q
    ||||| | ||||||||| ||||||| ||||| ||||| ||||| |||||||||||    
8439148 tgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagc 8439094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 8412151 - 8411976
Alignment:
38 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 137  Q
    |||||||||||||||||||||||||||||||||  ||||||   ||||||  | ||||| |||||   |||||| ||||| ||||||||||| ||||| |    
8412151 aatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgt 8412052  T
138 tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgcatttgtagg 213  Q
    ||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||||||||| || ||| ||||||||||    
8412051 tgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctacatttgtagg 8411976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 8434249 - 8434074
Alignment:
38 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 137  Q
    |||||||||||||||||||||||||||||||||  ||||||   ||||||  | ||||| |||||   |||||| ||||| ||||||||||| ||||| |    
8434249 aatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgt 8434150  T
138 tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgcatttgtagg 213  Q
    ||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||||||||| || ||| ||||||||||    
8434149 tgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctacatttgtagg 8434074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 8395538 - 8395692
Alignment:
38 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 137  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| || |||||  | ||||||  |||||| ||||| ||||||||||| ||||| |    
8395538 aatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatagctt 8395637  T
138 tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagc 192  Q
    ||||| | ||||||||| ||||||| ||||| ||||| ||||| |||||||||||    
8395638 tgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagc 8395692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 8417366 - 8417212
Alignment:
41 ggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattga 140  Q
    ||||||||| ||||||||||||||||||||  ||||||   ||||||  | ||||| |||||   |||||| ||||| ||||||||||| ||||| ||||    
8417366 ggatggagtaaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttga 8417267  T
141 agattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaat 195  Q
    || | ||||||||| ||||||| ||||| ||||||||||| ||||||||||||||    
8417266 aggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaat 8417212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 8403836 - 8403777
Alignment:
283 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggatt 342  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
8403836 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 8403777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 8368163 - 8368100
Alignment:
283 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattcttt 346  Q
    |||||||||||||||||||||||||||||| | |||||||||||||   |||||||||||||||    
8368163 ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattcttt 8368100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 8401247 - 8401310
Alignment:
283 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattcttt 346  Q
    |||||||||||||||||||||||||||||| | |||||||||||||   |||||||||||||||    
8401247 ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattcttt 8401310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 8422824 - 8422887
Alignment:
283 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattcttt 346  Q
    |||||||||||||||||||||||||||||| | |||||||||||||   |||||||||||||||    
8422824 ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattcttt 8422887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 8411912 - 8411867
Alignment:
283 ttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 328  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
8411912 ttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 8431063 - 8431018
Alignment:
283 ttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 328  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
8431063 ttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 8434010 - 8433965
Alignment:
283 ttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 328  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
8434010 ttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 8404048 - 8403959
Alignment:
65 gaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagt 154  Q
    ||||||| ||| || |||||||| || ||||| ||||| ||||| || ||||||||| | || ||||| ||||| |||||||||||||||    
8404048 gaaatgaaggaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagt 8403959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 8416993 - 8416952
Alignment:
283 ttttgagcatggtggacaagttggtatggtgtttgaaatgta 324  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
8416993 ttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 8395749 - 8395825
Alignment:
252 tggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 328  Q
    |||| || ||| |||||| |||||| |||  |||||| |||||||||||| |||| ||||| |||||||||||||||    
8395749 tggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggcatggtttttgaaatgtataga 8395825  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 8417197 - 8417081
Alignment:
73 ggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtcca 172  Q
    ||||||| |||||||  ||||||| |||||   |||||| ||| | || |||||||| ||||| |||||| |  |||||||| | ||||| ||||| |||    
8417197 ggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggcca 8417098  T
173 ttactcactggaattgc 189  Q
    |||||||| ||||||||    
8417097 ttactcacaggaattgc 8417081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 8429676 - 8429632
Alignment:
298 acaagttggtatggtgtttgaaatgtatagaaactgtggtggatt 342  Q
    ||||||||||||| ||||| | ||||||||||||||| |||||||    
8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggatt 8429632  T

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