View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_high_18 (Length: 339)
Name: NF10207_high_18
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 33795063 - 33794777
Alignment:
| Q |
1 |
gttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcannnnnnngtttgtccaccagctcgaaagaaagctag |
100 |
Q |
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| T |
33795063 |
gttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcattttttggtttgcccaccagctcgaaagaaagctag |
33794964 |
T |
|
| Q |
101 |
agtaacacgaatcaagaagaattcagccccatcatctcaagtgttctttcaagttcctcacgatctggct------------tttcgcaagccaaacatt |
188 |
Q |
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| T |
33794963 |
agtaacacgaatcaacaagaattcagccccaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcgcaagccaaacatt |
33794864 |
T |
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| Q |
189 |
gcaagaagatcataaatatatatatcttagccagttgggcaatttaattccaattcttgagatagaaaagaagaaataaggaagaag |
275 |
Q |
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| T |
33794863 |
gcaagaagatcataaatatatagatcttagctagctgggcaatttaattccaattcttgagatagaaaggaagaaataaggaagaag |
33794777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 16780431 - 16780692
Alignment:
| Q |
1 |
gttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcannnnnnn---gtttgtccaccagctcgaaagaaagc |
97 |
Q |
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||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||| ||||||| | |
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| T |
16780431 |
gttctaagagagaatgaacaagagtgtcacacaccaacttcatcacgaggtcaaa--gtagccataattttttagtttgtccaccagctccaaagaaatc |
16780528 |
T |
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| Q |
98 |
tagagtaacacgaatcaagaagaattcagccccatcatctcaagtgttctttcaagttcctcacgatctggct------------tttcgcaagccaaac |
185 |
Q |
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|||||||||| | ||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
16780529 |
aagagtaacacaacgcaacaagaattcagctctaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcgcaaaccaaac |
16780628 |
T |
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| Q |
186 |
attgcaagaagatcataaatatatatatcttagccagttgggcaatttaattccaattcttgag |
249 |
Q |
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||||||||||||||| ||||||||| ||||||| || | ||||||||| ||| | |||||||| |
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| T |
16780629 |
attgcaagaagatcagaaatatatagttcttagctagctaggcaatttagttctatttcttgag |
16780692 |
T |
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