View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_high_2 (Length: 549)
Name: NF10207_high_2
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 47 - 538
Target Start/End: Complemental strand, 35953582 - 35953074
Alignment:
| Q |
47 |
tttataaactctcacttcttggtataaatgacttaacttcattaaataagtggttcaaaattcgatttctagttcacatgtatnnnnnnnn--------- |
137 |
Q |
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| T |
35953582 |
tttataaactctcacttcttggtataaacgacttaacttcattaaataagtggttcagaattcgatttctagttcacatgtataaaaaaaaaaaaaaaaa |
35953483 |
T |
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| Q |
138 |
cagctataatcattctcgatgtaaactattgataaaaactcgatgtaaactactgatnnnnnnnnnnnnttaagtatatgtaattatttttagaaaaaca |
237 |
Q |
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| T |
35953482 |
cagctataatcattctcgatgtaaactatcgataaaaactcgatgtaaactactgataaaaaaa-----ttaagtatatgtaattatttttaaaaaaaca |
35953388 |
T |
|
| Q |
238 |
gctataatatacttacttgatggtaaaagattattttacatcgttggtgtactccat---taaacttcaaatatatttcagattaa----------ttaa |
324 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
35953387 |
gctataatatacttacatgatggtaaaagattattttacatcgttagtgtactccataattaaacttcaaatatatttcagattaacaaagattaattaa |
35953288 |
T |
|
| Q |
325 |
tacttgtctgcaagtgataaagcatgaaaaaccaaaacttgttagcattttccaaaccaaaatgcagaagggtccctatgacccaacagatgtaataaat |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35953287 |
tacttgtctgcaagtgataaagcatgaaaaaccaaaacttgttaacattttccaaaccaaaatgcagaagggtccctatgacccaacagatgtaataaat |
35953188 |
T |
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| Q |
425 |
gcaaacctatggggaccactgcatattcgaccaatgcttgtttggtgagacttctcatcatgtctatatacgttatgcaatgaatgcatttctatttatt |
524 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35953187 |
gcaaacctgtggggaccactgcatattcgaccaatgcttgttttgtgagacttctcatcaagtctatatacgttatgcaatgaatgcatttctatttatt |
35953088 |
T |
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| Q |
525 |
gcagctaaattcat |
538 |
Q |
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| T |
35953087 |
gcagctaaattcat |
35953074 |
T |
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