View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_high_30 (Length: 254)
Name: NF10207_high_30
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 621805 - 621902
Alignment:
| Q |
138 |
aagattgcaagtatacgtttcctttaacttttgtagccaccaaggaaaagttgagcaagcaggctattctaaagcagtttctgtatgtttggttaggg |
235 |
Q |
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| T |
621805 |
aagattgcaagtatacgtttcctttaacttttgtagccaccaaggaaaagttgagcaagcaggctatcctaaagcagtttctgtatgtttggttaggg |
621902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 621717 - 621750
Alignment:
| Q |
50 |
caatattcctatacaagttgttcaacatgacttg |
83 |
Q |
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| T |
621717 |
caattttcctatacaagttgttcaacatgacttg |
621750 |
T |
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