View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_high_39 (Length: 232)
Name: NF10207_high_39
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_high_39 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 713888 - 713673
Alignment:
| Q |
1 |
gtaaatcatcaatcattcctaaatagaatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgtt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
713888 |
gtaaatcatcaatcattcctaaatagcatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgtt |
713789 |
T |
|
| Q |
101 |
attgacccttaattttatgatgattctgcatgttaaactatatttacaaatttcaaaagaaaatgtaaatttttgagaaatattctaattgttgtattct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
713788 |
attgacccttaattttatgatgattctgcatgttaaactatatttacaaatttcaaaagaaaatgtaaatttttgggaaatattctaattgttgtattct |
713689 |
T |
|
| Q |
201 |
tttgttgtgccttcat |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
713688 |
tttgttgtgccttcat |
713673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 21368540 - 21368658
Alignment:
| Q |
22 |
aatagaatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgttattgacccttaattttatgat |
121 |
Q |
| |
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||||| |||||||||| | |||||||| |||||||||||||||| |||| |||||||| || |||| ||||||||||||||||||||||||| ||||| |
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| T |
21368540 |
aatagcatgcaagcactgttagaaattctgttggttttcttttt-aaatgggtgtttagatggattgccattttatgttattgacccttaatcttatgtc |
21368638 |
T |
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| Q |
122 |
gattctgcatgttaaactat |
141 |
Q |
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|| |||| ||||||||||| |
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| T |
21368639 |
gagtctgggtgttaaactat |
21368658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3763737 - 3763518
Alignment:
| Q |
1 |
gtaaatcatcaatcattcctaaatagaatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgtt |
100 |
Q |
| |
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|||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3763737 |
gtaagtcatcaatcattcttaaatagcatgcaagcaccggtagaaattttgttagttttcttttttaaattggtgtttaaatagatttccattttatgtt |
3763638 |
T |
|
| Q |
101 |
attgacccttaattttat----gatgattctgcatgttaaactatatttacaaatttcaaaagaaaatgtaaatttttgagaaatattctaattgttgta |
196 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3763637 |
tttgacccttaattttatgatggatgattctgcatgttaaactatatttacaagtttcaaaagaaaatgtaaatttttgggaaatattctaattgttgta |
3763538 |
T |
|
| Q |
197 |
ttcttttgttgtgccttcat |
216 |
Q |
| |
|
||||||||||||| |||||| |
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| T |
3763537 |
ttcttttgttgtgtcttcat |
3763518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 13065 - 13183
Alignment:
| Q |
22 |
aatagaatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgttattgacccttaattttatgat |
121 |
Q |
| |
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||||| |||||||||| | |||||||| |||||||||||||||| |||| |||||||| || |||| ||||||||||||||||||||||||| ||||| |
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| T |
13065 |
aatagcatgcaagcactgttagaaattctgttggttttcttttt-aaatgggtgtttagatggattgccattttatgttattgacccttaatcttatgtc |
13163 |
T |
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| Q |
122 |
gattctgcatgttaaactat |
141 |
Q |
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|| |||| ||||||||||| |
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| T |
13164 |
gagtctgggtgttaaactat |
13183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 23900029 - 23899911
Alignment:
| Q |
22 |
aatagaatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgttattgacccttaattttatgat |
121 |
Q |
| |
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||||| |||||||||| | |||||||| |||||||||||||||| |||| |||||||| || |||| ||||||||||||||||||||||||| ||||| |
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| T |
23900029 |
aatagcatgcaagcactgttagaaattctgttggttttcttttt-aaatgggtgtttagatggattgccattttatgttattgacccttaatcttatgtc |
23899931 |
T |
|
| Q |
122 |
gattctgcatgttaaactat |
141 |
Q |
| |
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|| |||| ||||||||||| |
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| T |
23899930 |
gagtctgggtgttaaactat |
23899911 |
T |
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