View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10207_high_4 (Length: 522)

Name: NF10207_high_4
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10207_high_4
NF10207_high_4
[»] chr4 (2 HSPs)
chr4 (1-504)||(53075020-53075523)
chr4 (49-167)||(48436821-48436939)
[»] chr2 (5 HSPs)
chr2 (4-170)||(15869137-15869303)
chr2 (4-167)||(45197310-45197473)
chr2 (394-483)||(15869511-15869600)
chr2 (400-483)||(45197191-45197274)
chr2 (1-110)||(21980475-21980584)
[»] chr5 (1 HSPs)
chr5 (394-485)||(15161674-15161765)
[»] chr3 (2 HSPs)
chr3 (28-87)||(50276218-50276277)
chr3 (396-482)||(50276577-50276663)
[»] chr8 (3 HSPs)
chr8 (53-167)||(971879-971993)
chr8 (31-177)||(26790420-26790566)
chr8 (395-484)||(26790790-26790879)
[»] chr1 (4 HSPs)
chr1 (28-122)||(1462668-1462762)
chr1 (28-87)||(1496913-1496972)
chr1 (408-484)||(1496521-1496597)
chr1 (395-484)||(1463024-1463113)
[»] chr7 (1 HSPs)
chr7 (31-161)||(48664583-48664713)


Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 53075523 - 53075020
Alignment:
Q  1 aacgatgctccagctttgaaaagggctgatattggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53075523 aacgatgctccagctttgaaaagggctgatattggaatcgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctg 53075424  T
Q  101 gattgagtgttatcatcagtgcagtcttaactagtagagctatttttcaaagaatgaaaaactacacggtcagtttctgtctgctttcttcataatcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53075423 gattgagtgttatcatcagtgcagtcttaactagtagagctatttttcaaagaatgaaaaactacacggtcagtttctgtctgctttcttcataatcaat 53075324  T
Q  201 ttattttgctcttgtagtttccaaattaacaccctttccattattttattttcattgcagatctatgctgtatccatcactatccgtatagtggtaagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53075323 ttattttgctcttgtagtttccaaattaacaccctttccattattttattttcattgcagatctatgctgtatccatcactatccgtatagtggtaagtg 53075224  T
Q  301 aataagaatgttatgtctgtatgtaaattcaatacgacaagaaatgaaagaatattcatcagtttgggttttcattctcttttcccccttgattgcagtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53075223 aataagaatgttatgtctgtatgtaaattcaatacgacaagaaatgaaagaatattcatcagtttgggttttcattctcttttcccccttgattgcagtt 53075124  T
Q  401 tggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggtaaaactctttgcagatat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53075123 tggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggtaaaactctttgcagatat 53075024  T
Q  501 ttct 504  Q
    ||||    
T  53075023 ttct 53075020  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 48436939 - 48436821
Alignment:
Q  49 gatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctggattgagtgttatcatcagtgcagtcttaactagtagagctatttttc 148  Q
    ||||| || |||||||||||| |||||||||||||||| |||||||| || ||| | ||||| ||  | ||||| || |||||||| ||||| || || |    
T  48436939 gatgcaactgatgctgcaagaagtgcttctgacattgttttgacagagccaggactaagtgtgattgtgagtgcggtgttaactagcagagccatcttcc 48436840  T
Q  149 aaagaatgaaaaactacac 167  Q
    |||| ||||||||||||||    
T  48436839 aaaggatgaaaaactacac 48436821  T

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Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 15869137 - 15869303
Alignment:
Q  4 gatgctccagctttgaaaagggctgatattggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctggat 103  Q
    |||||||| || |||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| |    
T  15869137 gatgctcctgcattgaaaaaagccgatattggaattgctgttgctgatgctactgatgctgcaagaggtgcttctgatatagtcttaacagaacctggtt 15869236  T
Q  104 tgagtgttatcatcagtgcagtcttaactagtagagctatttttcaaagaatgaaaaactacacggt 170  Q
    ||||||||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| |||||    
T  15869237 tgagtgttatcatcagtgctgtcttaacaagtagagctatcttccaaagaatgaagaactatacggt 15869303  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 45197473 - 45197310
Alignment:
Q  4 gatgctccagctttgaaaagggctgatattggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctggat 103  Q
    |||||||| || |||||||| || |||||||||||||| || |||||||| || ||||| ||  ||||||| |||||||| ||| | ||||| |||||||    
T  45197473 gatgctcctgcattgaaaagagcagatattggaattgcagtggctgatgcaactgatgcagctcgaggtgcatctgacatagtcctcacagagcctggat 45197374  T
Q  104 tgagtgttatcatcagtgcagtcttaactagtagagctatttttcaaagaatgaaaaactacac 167  Q
    ||||||||||  | ||||||||| | || || || |||||||||||||||||||| ||||||||    
T  45197373 tgagtgttattgtgagtgcagtcctcacaagcagggctatttttcaaagaatgaagaactacac 45197310  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 394 - 483
Target Start/End: Original strand, 15869511 - 15869600
Alignment:
Q  394 tgcagtttggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggta 483  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||| | ||||||||||    
T  15869511 tgcagtttggcttcatgtttattgcactgatatggaagtttgatttctctccattcatggttttgattattgccattttaaatgatggta 15869600  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 45197274 - 45197191
Alignment:
Q  400 ttggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggta 483  Q
    ||||||| ||| || |||| || || ||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||    
T  45197274 ttggctttatgctccttgctctaatttggaaatttgatttctctccttttatggttttgatcattgccatacttaatgatggta 45197191  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21980584 - 21980475
Alignment:
Q  1 aacgatgctccagctttgaaaagggctgatattggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctg 100  Q
    |||||||| ||||| ||||| | ||| || ||||| ||||||||||||||||| || ||||| |||||  |||| || |||||||||||||| || || |    
T  21980584 aacgatgcaccagcattgaagaaggcagacattggtattgctgttgctgatgcaactgatgccgcaaggagtgcctcagacattgtcttgactgagccgg 21980485  T
Q  101 gattgagtgt 110  Q
    | ||||||||    
T  21980484 gtttgagtgt 21980475  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 485
Target Start/End: Complemental strand, 15161765 - 15161674
Alignment:
Q  394 tgcagtttggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggtaaa 485  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||| | ||||||||||||    
T  15161765 tgcagtttggctttatgtttattgcactgatatggaaatttgatttctctccattcatggttttgattattgccattttaaatgatggtaaa 15161674  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 50276218 - 50276277
Alignment:
Q  28 gatattggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtc 87  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  50276218 gatattggaattgctgttgctgatgctacagatgctgctagaggtgcttctgatattgtc 50276277  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 482
Target Start/End: Original strand, 50276577 - 50276663
Alignment:
Q  396 cagtttggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggt 482  Q
    |||||||| ||||||||||||||  |||||||||| ||||| ||  | || |||||||| || ||||| ||||| || |||||||||    
T  50276577 cagtttggtttcatgttcattgccttgatctggaagtttgattttgcacccttcatggtgttaattatcgccatactaaatgatggt 50276663  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 971993 - 971879
Alignment:
Q  53 ctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctggattgagtgttatcatcagtgcagtcttaactagtagagctatttttcaaag 152  Q
    ||||||| ||||||||| | ||||||||||| ||  ||||||||||||| |||||||| ||||| |||||||| ||||| ||| |||| ||||| || ||    
T  971993 ctacagacgctgcaagaagcgcttctgacatagtgctgacagaacctggtttgagtgtcatcataagtgcagttttaaccagtcgagcaattttccagag 971894  T
Q  153 aatgaaaaactacac 167  Q
     ||||||||||||||    
T  971893 gatgaaaaactacac 971879  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 26790420 - 26790566
Alignment:
Q  31 attggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctggattgagtgttatcatcagtgcagtcttaa 130  Q
    ||||||||||| ||||||||||| ||||||||||| ||| |||||||||| |||||| | || ||||||||  | ||||| || |||||||| ||  | |    
T  26790420 attggaattgcggttgctgatgccacagatgctgctagaagtgcttctgatattgtcctcactgaacctggtcttagtgtcattatcagtgccgtgctca 26790519  T
Q  131 ctagtagagctatttttcaaagaatgaaaaactacacggtcagtttc 177  Q
    | || || || ||||| || |||||||| ||||| ||||| ||||||    
T  26790520 ccagcagggccattttccagagaatgaagaactatacggttagtttc 26790566  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 484
Target Start/End: Original strand, 26790790 - 26790879
Alignment:
Q  395 gcagtttggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggtaa 484  Q
    ||||||||| || ||| | |||||  |||| ||||||||||| || ||||| |||||||| ||||| ||||| || ||||||||||||||    
T  26790790 gcagtttggttttatgcttattgctttgatttggaaatttgatttttctcccttcatggttttgatcattgcaatacttaatgatggtaa 26790879  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 1462668 - 1462762
Alignment:
Q  28 gatattggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctggattgagtgttatcatcagtgc 122  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| | || ||||||||  | ||||| || ||||||||    
T  1462668 gatattggaattgctgttgctgatgctacagatgctgctagaagtgcttctgatattgtcctcactgaacctggtctcagtgtcattatcagtgc 1462762  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 1496972 - 1496913
Alignment:
Q  28 gatattggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtc 87  Q
    ||||| |||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||    
T  1496972 gatatcggaattgcagttgctgatgctacagatgctgctagaagtgcttctgatattgtc 1496913  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 1496597 - 1496521
Alignment:
Q  408 atgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggtaa 484  Q
    ||||| |||||  |||||||||| ||||| ||  | || |||||||| ||||||||||||||||| |||||||||||    
T  1496597 atgtttattgcgttgatctggaagtttgattttgcacccttcatggttttgattattgccattctaaatgatggtaa 1496521  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 484
Target Start/End: Original strand, 1463024 - 1463113
Alignment:
Q  395 gcagtttggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggtaa 484  Q
    ||||||||| |||||||| |||||  |||| ||||||||||| ||  | || |||||||| ||||| ||||| || || |||||||||||    
T  1463024 gcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggtaa 1463113  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 48664583 - 48664713
Alignment:
Q  31 attggaattgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctggattgagtgttatcatcagtgcagtcttaa 130  Q
    |||||||| |||||  |||||||||||||||| |||||| ||||| |||| || ||||| || || ||||| || |||||||| ||||| || || ||||    
T  48664583 attggaatagctgtgtctgatgctacagatgccgcaagaagtgctgctgatatagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaa 48664682  T
Q  131 ctagtagagctatttttcaaagaatgaaaaa 161  Q
    ||||  ||||||| |||||||| ||||||||    
T  48664683 ctagccgagctatatttcaaaggatgaaaaa 48664713  T

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