View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_high_43 (Length: 227)
Name: NF10207_high_43
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_high_43 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3674685 - 3674912
Alignment:
| Q |
1 |
agtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674685 |
agtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgatttt |
3674784 |
T |
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| Q |
101 |
catccttgttgaccatggcatagtagcagagtatcctgtttgtattatgttagaacatcaacctcggctcaaaag-aaaaacgcaaacaaataacacacg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3674785 |
catccttgttgaccatggcatagtagcagagtatcctgtttgtattatgttagaacatcaacctcggctcaaaagaaaaaacgcaaacaaataacacacg |
3674884 |
T |
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| Q |
200 |
agatttgatcagtgagacgtctacggct |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3674885 |
agatttgatcagtgagacgtctacggct |
3674912 |
T |
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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 48553689 - 48553545
Alignment:
| Q |
1 |
agtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgatttt |
100 |
Q |
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|||| ||||| |||||||||| ||||||||| || || |||||||||||||||||||||||||| || |||| || ||||| || || ||||| ||||| |
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| T |
48553689 |
agtccagtaatatatttgaagttttgaaatccctataaattacaggtttatctgcttcatgaaggaaagctagtcccttagctgcacctaatgcaatttt |
48553590 |
T |
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| Q |
101 |
catccttgttgaccatggcatagtagcagagtatcctgtttgtat |
145 |
Q |
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| T |
48553589 |
cattctggttgaccatggtaatgtagcagagtatcctgattgtat |
48553545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44196493 - 44196556
Alignment:
| Q |
1 |
agtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaag |
64 |
Q |
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|||| ||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||||||| |
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| T |
44196493 |
agtccagtaatatatttgaagttttgaaatccctatatattacaagtttatctgcttcatgaag |
44196556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 51938674 - 51938791
Alignment:
| Q |
1 |
agtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgatttt |
100 |
Q |
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|||||| ||||||||||||| |||||||||||||||| || || ||||| | ||| ||||| | ||| |||| ||||| |||||||| | || ||||| |
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| T |
51938674 |
agtctaataagatatttgaacctttgaaatctctgtagatgactggtttctttgcatcatgtaaaaaagctagaccttttgcagctccaacagcaatttt |
51938773 |
T |
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| Q |
101 |
catccttgttgaccatgg |
118 |
Q |
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||| |||||||||||||| |
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| T |
51938774 |
cattcttgttgaccatgg |
51938791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 18327498 - 18327607
Alignment:
| Q |
9 |
aagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgattttcatccttg |
108 |
Q |
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||||| |||||||||||||||||||| | || || |||| || |||||||||||||| ||||| ||||| |||||||| | || |||||||| |||| |
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| T |
18327498 |
aagatgtttgaagctttgaaatctctaaaaataactggttgctcagcttcatgaagaaaggctaaaccttttgcagctccaacagcaattttcattcttg |
18327597 |
T |
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| Q |
109 |
ttgaccatgg |
118 |
Q |
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|||||||||| |
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| T |
18327598 |
ttgaccatgg |
18327607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19965880 - 19965817
Alignment:
| Q |
1 |
agtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaag |
64 |
Q |
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|||| ||||| ||||||||| ||||||||| || ||||||||| ||||||||||||||||||| |
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| T |
19965880 |
agtccagtaatatatttgaatttttgaaatccctatatattacaagtttatctgcttcatgaag |
19965817 |
T |
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