View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_high_5 (Length: 478)
Name: NF10207_high_5
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 43408992 - 43408548
Alignment:
| Q |
18 |
gttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatgttagtgctaatggtaaattgtgcg |
117 |
Q |
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| T |
43408992 |
gttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatgttagtgctaatggtaaattgtgcg |
43408893 |
T |
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| Q |
118 |
tcttgcacactgaagccaacacttccattatctcgttcacggctgcttcatatagctcttcaaatacctaattattcattatcatatcatttttagaaac |
217 |
Q |
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| T |
43408892 |
tcttgcacactgacgccaacacttccattatctcgttcaccgctgcttcatatagctcttcaaatacctaattattcattatcatatcatttttagaaac |
43408793 |
T |
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| Q |
218 |
aattttatttagtttttgttgatttaatcaaatccagtactatgatctga---tgattgtttgc---ttacctttactgcttgtgggatattcatgttgt |
311 |
Q |
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| T |
43408792 |
aattttatatagtttttgttgatctaatcaaatccagtactatgatctgatgatgattgtttgctaattacctttactgcttgtgggatattcatgttgt |
43408693 |
T |
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| Q |
312 |
gactacttctaaaatcaacagcctgcatcagcaaaagatggatccatattcaatctcatgtatgtttctaacatttgttaatttaatttcaagaagaagt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408692 |
gactacttctaaaatcaacagcctgcatcagcaaaagatggatccatattcaatctcatgtatgtttctaacatttgttaatttaatttcaagaagaagt |
43408593 |
T |
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| Q |
412 |
aacaaacatatatacctcaagagcattagagagatgatcaagttgtgga |
460 |
Q |
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| T |
43408592 |
aacaaac----atacctcaagagcattagagagatgatcaagttgtgga |
43408548 |
T |
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