View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10207_low_10 (Length: 411)

Name: NF10207_low_10
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10207_low_10
NF10207_low_10
[»] chr4 (6 HSPs)
chr4 (18-401)||(28787235-28787617)
chr4 (188-395)||(6824695-6824902)
chr4 (199-392)||(24853579-24853770)
chr4 (18-180)||(6824322-6824483)
chr4 (18-180)||(24853993-24854154)
chr4 (18-148)||(17525959-17526088)
[»] chr5 (5 HSPs)
chr5 (198-375)||(5664493-5664669)
chr5 (221-369)||(5662908-5663055)
chr5 (197-333)||(5047506-5047642)
chr5 (197-333)||(5046735-5046871)
chr5 (313-401)||(15063331-15063419)
[»] scaffold0406 (1 HSPs)
scaffold0406 (18-180)||(5745-5906)
[»] chr8 (2 HSPs)
chr8 (188-318)||(1275680-1275812)
chr8 (338-369)||(1275861-1275892)
[»] chr3 (2 HSPs)
chr3 (18-180)||(12738847-12739009)
chr3 (198-401)||(12738427-12738624)
[»] chr1 (3 HSPs)
chr1 (18-180)||(22055947-22056108)
chr1 (269-347)||(29372231-29372307)
chr1 (310-355)||(22056330-22056375)
[»] chr7 (1 HSPs)
chr7 (197-331)||(37485568-37485703)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 28787617 - 28787235
Alignment:
Q  18 accattcttcctccttagttggtctagtaatgttccttgttggtatttttaaaaggcatttaacaaggaacacttttgctgcccagttgtatgtgaatct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28787617 accattcttcctccttagttggtctagtaatgttccttgttggtatttttaaa-ggcatttaacaaggaacacttttgctgcccagttgtatgtgaatct 28787519  T
Q  118 ccttgtcaacattgttgaagatttatgacagagagaattcctgcttcatagttgcttgtgagtgataccactgttgggttacctgaattcctctattctc 217  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  28787518 ccttgtcaacattgttaaagatttctgacggagagaattcctgcttcatagttgcttgtgagtgataccactattgggttacctgaattcatctgttctc 28787419  T
Q  218 tttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgttttgagtgatagactgtattttctagtttagtaggat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  28787418 tttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgttttgagtcataggctgaattttctagtttagtaggat 28787319  T
Q  318 agtagaattcatgttgtagaatatatagttggtgacacgagatcatattttgctacgcccagttaatgatcgaacgcatctctg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28787318 agtagaattcatgttgtagaatatatagttggtgacacgagatcatattttgttacgcccagttaatgatcgaacgcatctctg 28787235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 188 - 395
Target Start/End: Original strand, 6824695 - 6824902
Alignment:
Q  188 ctgttgggttacctgaattcctctattctctttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgttttgagt 287  Q
    ||||| || |||||||| |||||||||  ||| ||||||||||||||||||||||| | |||||  |||||| ||||||||||||||||||||||||||     
T  6824695 ctgttaggctacctgaactcctctattgccttcttagttttaggtttgaactcaaacaaagtaggcccttgtagctacatgtactccttttgttttgagc 6824794  T
Q  288 gatagactgtattttctagtttagtaggatagtagaattcatgttgtagaatatatagttggtgacacgagatcatattttgctacgcccagttaatgat 387  Q
     |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||     
T  6824795 cataggctggattttctagtttggtaggatagtagaattcatgttgtagaatatatagttggtgacacaaggtcatattttgctacgccctgttaatgac 6824894  T
Q  388 cgaacgca 395  Q
     |||||||    
T  6824895 tgaacgca 6824902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 199 - 392
Target Start/End: Complemental strand, 24853770 - 24853579
Alignment:
Q  199 cctgaattcctctattctctttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgttttgagtgatagactgta 298  Q
    |||||| |||||||||  ||| |||||||| |||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||| ||||  |  |    
T  24853770 cctgaactcctctattgccttcttagttttgggtttgaactcaaatagagtaaggccttgtggctagctgtactccttttgttttgagtcatagtttaaa 24853671  T
Q  299 ttttctagtttagtaggatagtagaattcatgttgtagaatatatagttggtgacacgagatcatattttgctacgcccagttaatgatcgaac 392  Q
    ||||||||||| |||||||||||||||||||||||| ||  | ||||||||||||| ||| | ||||||||| ||||| |||||||||||||||    
T  24853670 ttttctagtttggtaggatagtagaattcatgttgtgga--aaatagttggtgacatgaggttatattttgcgacgcctagttaatgatcgaac 24853579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 6824322 - 6824483
Alignment:
Q  18 accattcttcctccttagttggtctagtaatgttccttgttggtatttttaaaaggcatttaacaaggaacacttttgctgcccagttgtatgtgaatct 117  Q
    |||||| || |||||||| |  || |||||| ||||||||| || || ||||| | ||| | ||||||| ||||| || |||  ||||| ||||||||||    
T  6824322 accattttttctccttaggtactccagtaattttccttgttagtcttgttaaa-gacatctgacaaggaccacttatgttgcttagttgcatgtgaatct 6824420  T
Q  118 ccttgtcaacattgttgaagatttatgacagagagaattcctgcttcatagttgcttgtgagt 180  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  6824421 ccttgtcgacattgttgaagatttatgacagggagcattcctgcttcatagttgcttgtgagt 6824483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 24854154 - 24853993
Alignment:
Q  18 accattcttcctccttagttggtctagtaatgttccttgttggtatttttaaaaggcatttaacaaggaacacttttgctgcccagttgtatgtgaatct 117  Q
    ||||||||| ||||||||    ||||||||| ||||||||| || || ||||| | ||| ||||||||| ||||| | ||||  ||||| ||||||||||    
T  24854154 accattcttgctccttaggcactctagtaattttccttgttcgtcttgttaaa-gacatctaacaaggaccacttctactgcttagttgcatgtgaatct 24854056  T
Q  118 ccttgtcaacattgttgaagatttatgacagagagaattcctgcttcatagttgcttgtgagt 180  Q
    ||||||| |||||||||||||||| | |||| ||| |||||||||||||||||||||||||||    
T  24854055 ccttgtcgacattgttgaagatttctaacagggagcattcctgcttcatagttgcttgtgagt 24853993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 17525959 - 17526088
Alignment:
Q  18 accattcttcctccttagttggtctagtaatgttccttgttggtatttttaaaaggcatttaacaaggaacacttttgctgcccagttgtatgtgaatct 117  Q
    ||||||||| |||||||| |  ||||||||| || ||||||||| || ||||| | ||| ||||||||| ||||| ||||||  | ||| ||||||||||    
T  17525959 accattcttgctccttaggtactctagtaatttttcttgttggtcttgttaaa-gacatctaacaaggatcacttatgctgcttaattgcatgtgaatct 17526057  T
Q  118 ccttgtcaacattgttgaagatttatgacag 148  Q
    |||| || |||||||||||||||| ||||||    
T  17526058 ccttatcgacattgttgaagatttctgacag 17526088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 198 - 375
Target Start/End: Original strand, 5664493 - 5664669
Alignment:
Q  198 acctgaattcctctattctctttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgttttgagtgatagactgt 297  Q
    ||||||| |||||||||   || |||||||| |||||||||||||| | |||||   | ||||||||| | || | ||||||| | ||||  |||||||     
T  5664493 acctgaactcctctattgcattcttagttttgggtttgaactcaaacaaagtaggaacctgtggctacctatattacttttgtct-gagtcgtagactga 5664591  T
Q  298 attttctagtttagtaggatagtagaattcatgttgtagaatatatagttggtgacacgagatcatattttgctacgc 375  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  5664592 attttctagtttagtaggatagtaaaattcatattgcagaatatatagttggtgacacgaggtcatattttgctacgc 5664669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 221 - 369
Target Start/End: Original strand, 5662908 - 5663055
Alignment:
Q  221 ttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgttttgagtgatagactgtattttctagtttagtaggatagt 320  Q
    |||||||| |||||||||||||| | ||||| |  |||||||||| | |||| ||||||| | ||||  ||||||| |||||||||||||||||||||||    
T  5662908 ttagttttgggtttgaactcaaacaaagtagggatttgtggctacctatactacttttgtct-gagtcgtagactggattttctagtttagtaggatagt 5663006  T
Q  321 agaattcatgttgtagaatatatagttggtgacacgagatcatattttg 369  Q
    | ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  5663007 aaaattcatattgcagaatatatagttggtgacacgaggtcatattttg 5663055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 197 - 333
Target Start/End: Complemental strand, 5047642 - 5047506
Alignment:
Q  197 tacctgaattcctctattctctttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgttttgagtgatagactg 296  Q
    |||||||| |||||||||  ||| || ||||| |||||||||||||| | |||||||||| ||||  |||||||||||||||||||||||| ||| | ||    
T  5047642 tacctgaactcctctattgccttctttgttttgggtttgaactcaaacatagtagagcctggtggggacatgtactccttttgttttgagtcataaattg 5047543  T
Q  297 tattttctagtttagtaggatagtagaattcatgttg 333  Q
     ||||||||||||||| |||||||||| |||||||||    
T  5047542 gattttctagtttagttggatagtagagttcatgttg 5047506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 197 - 333
Target Start/End: Complemental strand, 5046871 - 5046735
Alignment:
Q  197 tacctgaattcctctattctctttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgttttgagtgatagactg 296  Q
    |||||||| |||||||||  ||| ||  |||| |||||||||||||| | |||||||||| ||||  |||||||||||||||||||||||| ||| | ||    
T  5046871 tacctgaactcctctattgccttctttattttgggtttgaactcaaacatagtagagcctggtggggacatgtactccttttgttttgagtcataaattg 5046772  T
Q  297 tattttctagtttagtaggatagtagaattcatgttg 333  Q
     ||||||||||||||| |||||||||| |||||||||    
T  5046771 gattttctagtttagttggatagtagagttcatgttg 5046735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 15063419 - 15063331
Alignment:
Q  313 aggatagtagaattcatgttgtagaatatatagttggtgacacgagatcatattttgctacgcccagttaatgatcgaacgcatctctg 401  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||| |||||    
T  15063419 aggatagtagaatacatgttgtagaatatatagttggtgacaagaggtcatattttgctacgcccaattaatgaccgaacgcagctctg 15063331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 5906 - 5745
Alignment:
Q  18 accattcttcctccttagttggtctagtaatgttccttgttggtatttttaaaaggcatttaacaaggaacacttttgctgcccagttgtatgtgaatct 117  Q
    ||||||| | |||||||| |  ||| ||||| |||||||||||| || ||||| | ||| ||||||||| ||||||||||||  ||||| || |||||||    
T  5906 accattcatgctccttaggtactcttgtaattttccttgttggtcttgttaaa-gacatctaacaaggaccacttttgctgcttagttgcatatgaatct 5808  T
Q  118 ccttgtcaacattgttgaagatttatgacagagagaattcctgcttcatagttgcttgtgagt 180  Q
    ||||||| ||||||||||| |||| |||||| ||| |||||||||||||| |||| |||||||    
T  5807 ccttgtcgacattgttgaaaatttctgacagggagcattcctgcttcataattgcgtgtgagt 5745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 318
Target Start/End: Original strand, 1275680 - 1275812
Alignment:
Q  188 ctgttgggttacctgaattcctctattctctttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttg-ttttgag 286  Q
    ||||| || |||||||| || ||||||  ||| |||||||| |||||||||||||||||||||  |||| |||||||| | ||||||||||| |||||||    
T  1275680 ctgttaggctacctgaactcttctatttccttcttagttttgggtttgaactcaaatagagtatggcctagtggctacctatactccttttgtttttgag 1275779  T
Q  287 tgatagact-gtattttctagtttagtaggata 318  Q
    | ||||||| | |||||||||||||||||||||    
T  1275780 tcatagactcggattttctagtttagtaggata 1275812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 369
Target Start/End: Original strand, 1275861 - 1275892
Alignment:
Q  338 atatatagttggtgacacgagatcatattttg 369  Q
    ||||||||||||||||||||||||||||||||    
T  1275861 atatatagttggtgacacgagatcatattttg 1275892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 12739009 - 12738847
Alignment:
Q  18 accattcttcctccttagttggtctagtaatgttccttgttggtatttttaaaaggcatttaacaaggaacacttttgctgcccagttgtatgtgaatct 117  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||| || || || | ||| ||||||||| |||| | |||||   |||| ||||||||||    
T  12739009 accattctttctccttagttgctctagtaattttccttgttggtcttgtt-aaggacatctaacaaggatcactctggctgcttggttgcatgtgaatct 12738911  T
Q  118 ccttgtcaacattgttg-aagatttatgacagagagaattcctgcttcatagttgcttgtgagt 180  Q
    ||||||| | ||||||| || |||| |||||| || ||||| ||||||||||||| ||||||||    
T  12738910 ccttgtcgatattgttgaaaaatttctgacagggaaaattcatgcttcatagttgtttgtgagt 12738847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 401
Target Start/End: Complemental strand, 12738624 - 12738427
Alignment:
Q  198 acctgaattcctctattctctttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgt-tttgagtgataga-ct 295  Q
    |||| |||||||||||| |||| |||||||| ||||||||||| || |||||||| |||| ||||||| | |||||||||| | |||||||  |||| |     
T  12738624 acctaaattcctctattttcttcttagttttgggtttgaactcgaacagagtagatccttatggctacctatactccttttctgtttgagtcttagacca 12738525  T
Q  296 gtattttctagtttagtaggatagtagaattcatgttgtagaatatatagttggtgacacgagatcatattttgctacgcccagttaatgatcgaacgca 395  Q
      | |||||||||        |||||||||||||||||||||| || ||||||| ||||| || | |||||||||||||||   |||||||  |||||||    
T  12738524 agaatttctagtt--------tagtagaattcatgttgtagaacatgtagttggcgacacaagttaatattttgctacgccttattaatgactgaacgca 12738433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 22055947 - 22056108
Alignment:
Q  18 accattcttcctccttagttggtctagtaatgttccttgttggtatttttaaaaggcatttaacaaggaacacttttgctgc-ccagttgtatgtgaatc 116  Q
    ||||||||| ||||||||||  ||||||||| |||||||||||| ||| | |||| ||| ||||||||| |||| ||| |||   ||||| ||| |||||    
T  22055947 accattcttgctccttagtttctctagtaattttccttgttggt-tttgttaaagacatctaacaaggatcactcttgatgctttagttggatg-gaatc 22056044  T
Q  117 tccttgtcaacattgttgaagatttatgacagagagaattcctgcttcatagttgcttgtgagt 180  Q
    || ||||| |   |||||||||||||||| || ||| |||| ||||||||||||| || |||||    
T  22056045 tctttgtcgatcctgttgaagatttatgatagcgagcattcatgcttcatagttgtttatgagt 22056108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 29372307 - 29372231
Alignment:
Q  269 tactccttttgttttgagtgatagactgtattttctagtttagtaggatagtagaattcatgttgtagaatatatagtt 347  Q
    |||||||||||| || ||| ||||| || ||||| |||||| ||||||||||||||||||||||||||| || ||||||    
T  29372307 tactccttttgtgtt-agtcatagattggatttt-tagtttggtaggatagtagaattcatgttgtagagtagatagtt 29372231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 22056330 - 22056375
Alignment:
Q  310 agtaggatagtagaattcatgttgtagaatatatagttggtgacac 355  Q
    |||||||||||  ||||||||  |||||||||||||||||||||||    
T  22056330 agtaggatagttcaattcatgccgtagaatatatagttggtgacac 22056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 331
Target Start/End: Original strand, 37485568 - 37485703
Alignment:
Q  197 tacctgaattcctctattctctttttagttttaggtttgaactcaaatagagtagagccttgtggctacatgtactccttttgt-tttgagtgatagact 295  Q
    |||||||| |||||| ||  ||| |||||||| |||||||||||| | || || | | | | |||||||   |||||||||| | ||||||| | |||||    
T  37485568 tacctgaactcctctcttgccttcttagttttgggtttgaactcatacagggtcgggtcgtatggctacccatactccttttatgtttgagtcaaagact 37485667  T
Q  296 gtattttctagtttagtaggatagtagaattcatgt 331  Q
      |||||||||||||||| |||||||||||||||||    
T  37485668 tgattttctagtttagtaagatagtagaattcatgt 37485703  T

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