View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_13 (Length: 384)
Name: NF10207_low_13
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 50404246 - 50404616
Alignment:
| Q |
1 |
tcatatatctatcaaagccgaagaatcagggtgtacaatgtagacatgaattctcagccattactgcataaatttagtnnnnnnntcaactgaaccctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50404246 |
tcatatatctatcaaagccgaagaatcagggtgtacaatgtagacatgaattctcagccattactgcataaatttagtaaaaaaatcaactgaaccctcc |
50404345 |
T |
|
| Q |
101 |
ccaagtattcaataatgcaaatataaattaaaatcaattcctcataaaaactttatgccgtttatcaaaatcgaatgaacgacgaattccttaaatgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50404346 |
ccaagtattcaataatgcaaatataaattaaaatcaattcctcataaaaactttatgccgtttatcaaaatcgaatgaacgacgaattccttaaatgtaa |
50404445 |
T |
|
| Q |
201 |
aatctaaccattccagcgtctctttcgaactggcctctgttgcttcatttcacctatatcaaccgtcgagttagtgttcaacttcaaactcttaactact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
50404446 |
aatctaaccattccagcgtctctttcgaactggcctttgttgcttcatttcacctatatcaaccgccgagttagtgttcaacttcaaactcttcactact |
50404545 |
T |
|
| Q |
301 |
tcgttattcaaactgatgggctgcttcactgcttctttattcataccaattggctgcttaaagcgctccct |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50404546 |
tcgttattcaaactgatgggctgcttcactgcttctttattcataccgattggctgcttaaagcgctccct |
50404616 |
T |
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