View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10207_low_19 (Length: 356)
Name: NF10207_low_19
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_19 |
 | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 90 - 347
Target Start/End: Complemental strand, 1182334 - 1182077
Alignment:
| Q |
90 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182334 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttc |
1182235 |
T |
|
| Q |
190 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182234 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
1182135 |
T |
|
| Q |
290 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182134 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
1182077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 35 - 342
Target Start/End: Complemental strand, 18194360 - 18194053
Alignment:
| Q |
35 |
accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaat |
134 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||| |||| ||| || | ||||| | | ||||||| | ||| |||||| |||||||||| |
|
|
| T |
18194360 |
accatatgctccttcccacttacttcaaatcctggtggttgtgtaatatacactttctcttcaagtggtccattcagaaatgcagactttacatctaaat |
18194261 |
T |
|
| Q |
135 |
gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccata |
234 |
Q |
| |
|
| | | |||||| || |||||||| | | ||| || |||||||| | |||||| ||| || ||| | ||||| || |||||||| ||||||||||| |
|
|
| T |
18194260 |
gtgatagtgaccagtttttactgcttgcaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtcaacaccata |
18194161 |
T |
|
| Q |
235 |
tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt |
334 |
Q |
| |
|
|||||| ||||| ||||||||||||| || ||||||| ||| || | || ||||| ||||||| ||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
18194160 |
tctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttcaccttgaaaatccatttaacatcaatggtt |
18194061 |
T |
|
| Q |
335 |
ttcttctt |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
18194060 |
ttcttctt |
18194053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1182382 - 1182340
Alignment:
| Q |
1 |
cttcaatccataaagtgtcttatgcagttcgtataccatatgc |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182382 |
cttcaatccataaagtgtcttatgcagttcgtataccatatgc |
1182340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 8169486 - 8169821
Alignment:
| Q |
8 |
ccataaagtgtcttatgcagttcgtataccatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccat |
107 |
Q |
| |
|
|||||||||| ||||| | || ||| |||||||||||| || || | | |||||||| | |||||| ||||||||||| | ||||||| |||||||||| |
|
|
| T |
8169486 |
ccataaagtgatttatgtaatttgtacaccatatgctcccttcctctgatttcaaatcttagaggttcagtaacatatatagtttcttccaatagtccat |
8169585 |
T |
|
| Q |
108 |
ttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgc |
207 |
Q |
| |
|
||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |||| ||| |||| |
|
|
| T |
8169586 |
ttaggaatgcagactttacatctaaatgaaacaatgaccatttcttactgctggttaatgcaataaccaatctcaatatttctatccttgatactggtgc |
8169685 |
T |
|
| Q |
208 |
aaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttacc |
307 |
Q |
| |
|
||| ||||||||||| |||| ||||| || |||||||||||||| ||||| ||||||||||| ||||||| |||| ||| |||||||| ||| || |
|
|
| T |
8169686 |
aaagacttcattatagtcaatttcatattaatgtaggaagcctctagctactagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgact |
8169785 |
T |
|
| Q |
308 |
ttgaaaattcatttcacatcaatggttttcttcttc |
343 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
8169786 |
ttgaaaatccatttcacattaatgtttttcttcttc |
8169821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 342
Target Start/End: Original strand, 32369179 - 32369486
Alignment:
| Q |
35 |
accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaat |
134 |
Q |
| |
|
|||| ||||||||| |||||||||||||| | || ||||| |||||||| | | |||||||||| ||||||| | ||| |||||| ||||||| || |
|
|
| T |
32369179 |
accacatgctccttcccttttacttcaaattcaggtggttgtgtaacatacatatcttcttctaatggtccattcagaaatgcagacttaacatctatat |
32369278 |
T |
|
| Q |
135 |
gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccata |
234 |
Q |
| |
|
|| | |||||||| ||||| || | | | ||| || |||||||| | |||||||| | || ||| | ||||| || |||||||| ||||||||||| |
|
|
| T |
32369279 |
gagataatgaccaattcttgctacaggccagtgccaccaccaatcttatagtttctaatttagctactggagcaaatacctcattatagtcaacaccata |
32369378 |
T |
|
| Q |
235 |
tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt |
334 |
Q |
| |
|
||||| | ||| ||||| || || | || ||||||| ||| |||| || |||| ||||||| ||| || |||||||| ||||| |||||||||||| |
|
|
| T |
32369379 |
tctctataagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttcactttgaaaatccatttaacatcaatggtt |
32369478 |
T |
|
| Q |
335 |
ttcttctt |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
32369479 |
ttcttctt |
32369486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 342
Target Start/End: Original strand, 4959145 - 4959452
Alignment:
| Q |
35 |
accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaat |
134 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||| ||||| | || ||| ||| |||||| | | ||||||| | ||| |||||| |||||||||| |
|
|
| T |
4959145 |
accatatgctcctttccacttacttcaaatactggtggttgtgcaatatacacatcttcttcaagtggtccattcagaaatgcagactttacatctaaat |
4959244 |
T |
|
| Q |
135 |
gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccata |
234 |
Q |
| |
|
| | |||||||| || |||||||| | | ||| || |||||||| | |||||| ||| || ||| | ||||| || |||||||| || |||||||| |
|
|
| T |
4959245 |
gtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtctacaccata |
4959344 |
T |
|
| Q |
235 |
tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt |
334 |
Q |
| |
|
|||||| ||||| |||||||| |||| || ||||||| ||| || | || ||||| |||||| ||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
4959345 |
tctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaatccatttaacatcaatggtt |
4959444 |
T |
|
| Q |
335 |
ttcttctt |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
4959445 |
ttcttctt |
4959452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
| Q |
244 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
326 |
Q |
| |
|
||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
17153 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
17071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
| Q |
244 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
326 |
Q |
| |
|
||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
8190578 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
8190496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University