View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_20 (Length: 348)
Name: NF10207_low_20
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 29733299 - 29733611
Alignment:
| Q |
20 |
tggcttagttccacattctcctgtaaatattccacttgagtaaaacttgaacatgcctctcatatcaatactaaccgaaaccggttgattggccacagct |
119 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29733299 |
tggcttagttccacattctcctgtaaaaatcccacttgagtaaaacttgaacatgcctctcatatcaataccaaccgaaaccggttgattggccacagct |
29733398 |
T |
|
| Q |
120 |
ttaagtagtgaatcttcactattactagggacttcttcatagctcttaatttgaactttgtgaattgcctttttacaagttcctttaacaactcccttgt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
29733399 |
ttaagtagtgaatcttcactattactagggacttcttcatagctcttaatttgaactttgtgacttacctttttacaagttcctttaacaactcgcttgt |
29733498 |
T |
|
| Q |
220 |
atggataatttgcttctgtcggaattccatcattttctaaaatgaatttaaaagcattaatcatattaccgttatcacatccattagtccgaccacttct |
319 |
Q |
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|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29733499 |
atggataatttgcttctgtcgcaattccaccattttctaaaatgaatttaaaagcattaatcatattaccgttatcacatcctttagtccgaccacttct |
29733598 |
T |
|
| Q |
320 |
atcacaatccaca |
332 |
Q |
| |
|
||||||||||||| |
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|
| T |
29733599 |
atcacaatccaca |
29733611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 29746930 - 29746664
Alignment:
| Q |
20 |
tggcttagttccacattctcctgtaaatattccacttgagtaaaacttgaacatgcctctcatatcaatactaaccgaaaccggttgattggccacagct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
29746930 |
tggcttagttccacattctcctgtaaatattccacttgagtaaaatttgagcatacctctcatatcaatattaaccgaaaccggttgattggccacaact |
29746831 |
T |
|
| Q |
120 |
ttaagtagtgaatcttcactattactagggacttcttcatagctcttaatttgaactttgtgaattgcctttttacaagttcctttaacaactcccttgt |
219 |
Q |
| |
|
||||||||||| || || ||||| ||||||||| || |||| |||||| ||||||| |||| |||| |||| | ||||||| ||||||||||| |
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| T |
29746830 |
ttaagtagtgagtcctcgctatttttagggacttgctcgtagcccttaatctgaacttggtgatgcaccttcttactatttccttt---aactcccttgt |
29746734 |
T |
|
| Q |
220 |
atggataatttgcttctgtcggaattccatcattttctaaaatgaatttaaaagcattaatcatattacc |
289 |
Q |
| |
|
|||||||| |||||||||| | ||||||| | ||||||||| ||||||||||||||| |||| ||||||| |
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| T |
29746733 |
atggataacttgcttctgtggcaattccaccgttttctaaattgaatttaaaagcatcaatcttattacc |
29746664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 29729963 - 29730080
Alignment:
| Q |
20 |
tggcttagttccacattctcctgtaaatattccacttgagtaaaacttgaacatgcctctcatatcaatactaaccgaaaccggttgattggccacagct |
119 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29729963 |
tggcttagttctacattctcctgtaaaaatcccacttgagtaaaacttgaacatgcctctcatatcaatactaaccgaaaccggttgattggccacagct |
29730062 |
T |
|
| Q |
120 |
ttaagtagtgaatcttca |
137 |
Q |
| |
|
||||| |||||||||||| |
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|
| T |
29730063 |
ttaagcagtgaatcttca |
29730080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 30056363 - 30056520
Alignment:
| Q |
20 |
tggcttagttccacattctcctgtaaatattccacttgagtaaaacttgaacatgcctctcatatcaatactaaccgaaaccggttgattggccacagct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || || ||||| |||| ||| ||||||||||||||||||||| || |
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|
| T |
30056363 |
tggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacggaaaccggttgattggccacaact |
30056462 |
T |
|
| Q |
120 |
ttaagtagtgaatcttcactattactagggacttcttcatagctcttaatttgaactt |
177 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||| || ||||||||||| ||||||| |
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|
| T |
30056463 |
ttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaactt |
30056520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 30072883 - 30072991
Alignment:
| Q |
20 |
tggcttagttccacattctcctgtaaatattccacttgagtaaaacttgaacatgcctctcat----atcaatactaaccgaaaccggttgattggccac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
30072883 |
tggcttagttccacattctcctgtaaatattccacttgagtaaaatctgaacatacctctcataaacatcaatactaaccgaaaccggttgattagccac |
30072982 |
T |
|
| Q |
116 |
agctttaag |
124 |
Q |
| |
|
|||| |||| |
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|
| T |
30072983 |
agctataag |
30072991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 29606420 - 29606500
Alignment:
| Q |
209 |
aactcccttgtatggataatttgcttctgtcggaattccatcattttctaaaatgaatttaaaagcattaatcatattacc |
289 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
29606420 |
aactcccttgtatggataacttgcttctgtggcaattccaccgttttctaaaatgaatttaaaagcatcaatcttattacc |
29606500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 29934944 - 29935044
Alignment:
| Q |
26 |
agttccacattctcctgtaaatattccacttgagtaaaacttgaacatgcctctcata---tcaatactaaccgaaaccggttgattggccacagcttta |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| ||||||| ||||| ||| ||||| | |||||||| ||||||||||||||||||||| |
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|
| T |
29934944 |
agttccacattctcctgtagatattccactcgagtaaaatctgaacatacctcttataacgtcaatgtttaccgaaactggttgattggccacagcttta |
29935043 |
T |
|
| Q |
123 |
a |
123 |
Q |
| |
|
| |
|
|
| T |
29935044 |
a |
29935044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 31185387 - 31185431
Alignment:
| Q |
26 |
agttccacattctcctgtaaatattccacttgagtaaaacttgaa |
70 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||| |
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|
| T |
31185387 |
agttccacattctcctgtataaattccacttgagtaaaacatgaa |
31185431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 31194214 - 31194258
Alignment:
| Q |
26 |
agttccacattctcctgtaaatattccacttgagtaaaacttgaa |
70 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||| |
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|
| T |
31194214 |
agttccacattctcctgtataaattccacttgagtaaaacatgaa |
31194258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 31176571 - 31176611
Alignment:
| Q |
26 |
agttccacattctcctgtaaatattccacttgagtaaaact |
66 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||||| |
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|
| T |
31176571 |
agttccacattttcctgtaaaaattccacctgagtaaaact |
31176611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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