View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_26 (Length: 326)
Name: NF10207_low_26
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 42433751 - 42434057
Alignment:
| Q |
1 |
cacagaagcaaacaatacgaacaagcaaaaatacgatacgaacaaacaaatagtaaccaaaagaacaaaccaccgccgaaccagccaaaacataacaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42433751 |
cacagaagcaaacaatacgaacaagcaaaaatacgatacgaacaaacaaatagtaaccagaagaacaaaccaccgccgaaccagccaaaacataacaaga |
42433850 |
T |
|
| Q |
101 |
ggtgacagcgctgccacccacctcaccaccgcagcggtgccacgaacacagccagtagtccaaccaaacaaaagaaagcacaaaaacacaatccaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42433851 |
ggtgacagcgctgccacccacctcaccaccgcagcggtgccacgaacacagccagtagtccaaccaaacaaaagaaagcacaaaaacacaatccaacctt |
42433950 |
T |
|
| Q |
201 |
tccaacgcagaggagacgagctgaaaaaccttgaaccagccagccaaggaatctacgcgacccacctacccaaagaacggaactggaacaaaccgcatca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42433951 |
tccaacgcagaggagacgagctgaaaaaccttgaaccagccagccaaggaatccacgcgacccacctacccaaagaacggaactagaacaaaccgcatca |
42434050 |
T |
|
| Q |
301 |
accaaag |
307 |
Q |
| |
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||||||| |
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| T |
42434051 |
accaaag |
42434057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 17302909 - 17302798
Alignment:
| Q |
6 |
aagcaaacaatacgaacaagcaaaaatacgatacgaacaaacaaatagtaaccaaaagaacaaaccaccgccgaaccagccaaaacataacaagaggtga |
105 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17302909 |
aagcaaacaatacgaacaagcgaaaatacgatagcaacaaacaaatagtaaccaaaagaacaaaccacctccgaaccagccaaaacataacaagaggtga |
17302810 |
T |
|
| Q |
106 |
cagcgctgccac |
117 |
Q |
| |
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||||| |||||| |
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| T |
17302809 |
cagcggtgccac |
17302798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 17302809 - 17302712
Alignment:
| Q |
132 |
cagcggtgccacgaacacagccagtagtccaaccaaacaaaagaaagcacaaaaacacaatccaacctttccaacgcagaggagacgagctgaaaaac |
229 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17302809 |
cagcggtgccacaaacacagccagtaacccaaccaaacaaaagaaagcacaaaaacacaatccaacctttccaacgcagaggagacgagctgaaaaac |
17302712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 22065454 - 22065380
Alignment:
| Q |
67 |
aaaccaccgccgaaccagccaaaacataacaagaggtgacagcgctgccacccacctcaccaccgcagcggtgcca |
142 |
Q |
| |
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||||| ||| ||| |||||||||||| ||||||||| ||| |||||||| ||| |||||||||||||||| |||| |
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| T |
22065454 |
aaacctccgacgagccagccaaaacagaacaagaggagacgacgctgcca-ccagctcaccaccgcagcggcgcca |
22065380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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