View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10207_low_28 (Length: 305)
Name: NF10207_low_28
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_28 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 1182865 - 1182556
Alignment:
| Q |
1 |
acttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182865 |
acttaccgcaaagcatatatcaggtctgttattgcataggcatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgcta |
1182766 |
T |
|
| Q |
101 |
cattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182765 |
cattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgat |
1182666 |
T |
|
| Q |
201 |
gca-----tttcccatcttgctagctttaaactccattcctcagaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgttt |
295 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182665 |
gcataacctttcccatcttgctagctttaaactccattcctaagaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgttt |
1182566 |
T |
|
| Q |
296 |
gaacttctca |
305 |
Q |
| |
|
|||||||||| |
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|
| T |
1182565 |
gaacttctca |
1182556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 26076311 - 26076002
Alignment:
| Q |
1 |
acttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgcta |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||| |||||| || ||||| |||||| ||||||||| |||| || | || |||||||| ||| |
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| T |
26076311 |
acttactgcaaagcatatatctggtctgttgttgcataagtatcttagtgatcccactatctgtttgaattcagtagactccgccttttcttcattacta |
26076212 |
T |
|
| Q |
101 |
cattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgat |
200 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| |||||||| |||||||||||||| |||| |
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| T |
26076211 |
cattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatctttcaagcagttctccaatgtacttctgttgat |
26076112 |
T |
|
| Q |
201 |
gcat-----ttcccatcttgctagctttaaactccattcctcagaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgttt |
295 |
Q |
| |
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|||| | || ||||||| | | ||||| | ||| ||||||||| | | |||| ||| ||||||||||||| ||||||| ||| |||||||| |
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| T |
26076111 |
gcatcactatgcctgctttgctagttgtgaactcaaatccaaggaaataagataatcttcccaaaccagtcatttcaaactcacacttcatagtgtgttt |
26076012 |
T |
|
| Q |
296 |
gaacttctca |
305 |
Q |
| |
|
|||||||||| |
|
|
| T |
26076011 |
gaacttctca |
26076002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 4958628 - 4958831
Alignment:
| Q |
1 |
acttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgcta |
100 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||| |||||||| ||||| |||||| ||||||||| |||| || || || |||||||| || |
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| T |
4958628 |
acttactgcaaagcatatatatggtctgttgttgcataagtatctcaatgatcccactatctgtttgaatttagtagactccaccttttcttcattactg |
4958727 |
T |
|
| Q |
101 |
cattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgat |
200 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| |||||||| |||||||||||||| |||| |
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| T |
4958728 |
cattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatatttcaagcagttctccaatgtacttctgctgat |
4958827 |
T |
|
| Q |
201 |
gcat |
204 |
Q |
| |
|
|||| |
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|
| T |
4958828 |
gcat |
4958831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 4958885 - 4958937
Alignment:
| Q |
253 |
ttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctca |
305 |
Q |
| |
|
|||| |||||| |||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
4958885 |
ttcccaaatcaatcatttcaaactcacacttcatagtgtgtttgaacttctca |
4958937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 5243120 - 5242820
Alignment:
| Q |
1 |
acttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgcta |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||| |||| |||||||| | ||| | |||| | |||||| |||| ||||||||||||||||||| | |
|
|
| T |
5243120 |
acttactgcaaagcatatatctggtctactattacataagtatctcatgg-tcctattatctgcatgaattcagtaggttctactttctcttcattgatg |
5243022 |
T |
|
| Q |
101 |
cattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgat |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||||||| || |||||||| ||||| ||||| || |||| |
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|
| T |
5243021 |
cattcatctagcttagcatttgtttcagaaggattagttgcagtgttacaatctaccatatcaaa----tcaagcagttccccaatatacttttgttgat |
5242926 |
T |
|
| Q |
201 |
gcat-----ttcccatcttgctagctttaaactccattcctcagaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgttt |
295 |
Q |
| |
|
|||| | || | ||||| ||||| || || | ||| |||||| || ||| |||| ||||||| |||||||||||||||| ||| |||||||| |
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|
| T |
5242925 |
gcattacaatacctacattgctggctttgaattctaatccaaggaaatatgacagtcttccaaaatcagacatttcaaattcacaccgcatagtgtgttt |
5242826 |
T |
|
| Q |
296 |
gaactt |
301 |
Q |
| |
|
|||||| |
|
|
| T |
5242825 |
gaactt |
5242820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 32368662 - 32368971
Alignment:
| Q |
1 |
acttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgcta |
100 |
Q |
| |
|
|||||| |||||| ||||||| ||| |||| ||||||| ||| ||| ||||| |||||| ||||||||| |||| || |||| | |||||||| || |
|
|
| T |
32368662 |
acttactgcaaaggatatatctggtttgttgttgcataagtacatcaatgatcccactatctgtttgaattcagtaggttttactctttcttcattagta |
32368761 |
T |
|
| Q |
101 |
cattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgat |
200 |
Q |
| |
|
|| ||||||| |||||||||||||||||| ||||| | || ||||||| || |||| | |||| |||| |||||||| ||||||||||| || |||| |
|
|
| T |
32368762 |
cactcatccaacttagcatttgtttcagatggattcgatgcaatgttgcagtcaatcatttgaaacctttcaagcagttccccaatgtacttttgttgat |
32368861 |
T |
|
| Q |
201 |
gcat-----ttcccatcttgctagctttaaactccattcctcagaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgttt |
295 |
Q |
| |
|
|||| | | ||||||| ||| || || | ||| |||||| || ||| ||||||||| |||||||||||||||||||| ||| |||||||| |
|
|
| T |
32368862 |
gcatcactatgcttgaattgctagttttgaattctaatccaaggaaatatgatagtcttcctaaataagtcatttcaaattcacactgcatagtgtgttt |
32368961 |
T |
|
| Q |
296 |
gaacttctca |
305 |
Q |
| |
|
|||||||||| |
|
|
| T |
32368962 |
gaacttctca |
32368971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 8169014 - 8169310
Alignment:
| Q |
15 |
atatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgctacattcatccagctt |
114 |
Q |
| |
|
|||||||||||||| |||| | || |||||| ||||||||||| || | || | | |||||||||||| || ||||| | || ||||||| | ||| |
|
|
| T |
8169014 |
atatatcaggtctgctattccttaagtatcttagagatccaaccatttgattaacctttgtagcttctacattttcttcctcactgaattcatcaaactt |
8169113 |
T |
|
| Q |
115 |
agcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgatgcat-----ttccc |
209 |
Q |
| |
|
||||||| | ||||| |||||||||| ||| ||||||| || ||||||||| |||| | || |||||||| ||||| || |||||||| |||| |
|
|
| T |
8169114 |
agcatttatctcagatggatttgtgatagtattgcaatttgacatatcaaatctttcatgtagctcaccaatatacttttgttgatgcataactattcct |
8169213 |
T |
|
| Q |
210 |
atcttgctagctttaaactccattcctcagaaa-taagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctca |
305 |
Q |
| |
|
| |||| ||| ||| || ||||||||| | ||| ||||| | | ||||||| || ||||||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
8169214 |
agcttgatagttttgaattccattcctaaaaaaataagaaaatcttcctaagtcggtcattttaaattcacactgcattgtgtgtttgaatttctca |
8169310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 12370726 - 12370527
Alignment:
| Q |
1 |
acttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgcta |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||| | ||||||| ||||||||| ||||| ||||| ||||||||| |||| || || || |||||||| || |
|
|
| T |
12370726 |
acttactgcaaagcatatatctggtctgctgttgcataagtatctcagtgatcccactatatgtttgaattcagtagactccaccttttcttcattactg |
12370627 |
T |
|
| Q |
101 |
cattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgat |
200 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| ||||||| |||||||||||||| |||| |
|
|
| T |
12370626 |
cattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatctttcaagcagttatccaatgtacttctgctgat |
12370527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 12368411 - 12368359
Alignment:
| Q |
253 |
ttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctca |
305 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
12368411 |
ttcccaaatcagtcatttcaaactcacacttcatagtgtgtttgaacttctca |
12368359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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