View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_29 (Length: 286)
Name: NF10207_low_29
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_29 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 14720988 - 14721240
Alignment:
| Q |
18 |
ttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaattt |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||||| |
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| T |
14720988 |
ttcaaaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagttttcaaggtagacatctcaaaagcttttaatacattggagtggaaattg |
14721087 |
T |
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| Q |
118 |
cttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggca |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14721088 |
cttcttagtgtattaag----tttggttttaatgatactttatgttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggca |
14721183 |
T |
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| Q |
218 |
agcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtctc |
274 |
Q |
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| T |
14721184 |
accagaatgattattttcattgtaagagaaaagtcaggcagggtgaccccctgtctc |
14721240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 28186821 - 28186697
Alignment:
| Q |
19 |
tcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttc |
118 |
Q |
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||||||||||| ||||| || ||||| ||||| |||||||| |||||| |||||||||| ||||||||||| |||||||| |||||||||| ||||||| |
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| T |
28186821 |
tcagaagcaataaatcatctccatcaaaaagcatatgcagggaatttacctttcaaggttgacatctcaaaggcttttgacacattggagtggaaatttc |
28186722 |
T |
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| Q |
119 |
ttcttagtgtattaagtaagtttgg |
143 |
Q |
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| T |
28186721 |
ttcttactgtgttaagaaagtttgg |
28186697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 12115073 - 12115128
Alignment:
| Q |
190 |
gctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagag |
245 |
Q |
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| T |
12115073 |
gctactctttcaatatctgtaaatggtaagcaaaatggttattttcattgtaagag |
12115128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 18923603 - 18923541
Alignment:
| Q |
37 |
cttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgat |
99 |
Q |
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| T |
18923603 |
cttcatcataaagcttttgcaggtaacttggctttcaaggtagatatttctaaagcttttgat |
18923541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 22562641 - 22562858
Alignment:
| Q |
25 |
gcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttcttctta |
124 |
Q |
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||||||||||| |||||||||||| |||||| ||||| ||||||| ||||| |||||||| ||||| |||||| | | || || || || || || | |
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| T |
22562641 |
gcaatcaatcatcttcatcagaaatcttatgtgggaaacctagcttttaaggtggacatctccaaagcctttgatactcttgaatggaagttcctgctaa |
22562740 |
T |
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| Q |
125 |
gtgtattaagtaagtttggttttaatg-atactttatgttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggcaagcaga |
223 |
Q |
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||| |||||||| |||||||| |||| | | ||| ||||||||||||||||| ||| | || | ||||||||| || |||| ||| ||||||||||||| |
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| T |
22562741 |
ctgttttaagtaaatttggtttcaatgcacaattt-tgttcttggattcataccatcctcaagtctgctactctctctatctctgttaatggcaagcaga |
22562839 |
T |
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| Q |
224 |
atggttattttcattgtaa |
242 |
Q |
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| T |
22562840 |
atggttactttcattgtaa |
22562858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 7573407 - 7573668
Alignment:
| Q |
19 |
tcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttc |
118 |
Q |
| |
|
||||||||||| ||||| | ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||| | |||||| | | ||||| | ||||| |
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| T |
7573407 |
tcagaagcaataaatcatcaccatcaaaaagcatatgcagggaatttggctttcaaggttgacatctcaaaggtttttgacacgctcgagtggacatttc |
7573506 |
T |
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| Q |
119 |
ttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggcaa |
218 |
Q |
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||||| | || |||| |||||||| || ||||||| || || || ||||| | ||||| |||| | ||||||||||||||||| |||||||||||| |
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| T |
7573507 |
ttctttg-gtgctaagaaagtttggattcaatgatagattttgctcctggatcaacacaattctaaactctgctactctttcaatctctgtcaatggcaa |
7573605 |
T |
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| Q |
219 |
gcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtctctgcttct |
281 |
Q |
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|| ||||| || || ||||| |||||| | ||||||| ||||||||| |||| || ||||| |
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| T |
7573606 |
acaaaatggatacttccattgcaagagaggagtcaggcagggtgaccccttgtcccttcttct |
7573668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 23779 - 23700
Alignment:
| Q |
19 |
tcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttga |
98 |
Q |
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|||||||| |||||||| || || | ||||||| |||||| ||| | ||||| |||||||||||||| ||||||||||| |
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| T |
23779 |
tcagaagcgatcaatcatctacacaacaaagcttttgcaggtaatcttgcttttaaggtagacatctccaaagcttttga |
23700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 23682888 - 23683049
Alignment:
| Q |
18 |
ttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaattt |
117 |
Q |
| |
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||||||||| |||||||| ||||| | || ||| ||| |||||| |||||||||| ||||| || |||||||||||||| | || || || || || |
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| T |
23682888 |
ttcagaagccatcaatcaacttcacaacaagtcttttgctggaaatctagctttcaaagtagatatttcaaaagcttttgacactttagaatggaagttc |
23682987 |
T |
|
| Q |
118 |
cttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaat |
179 |
Q |
| |
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||||| || || ||||| | |||||||||||||||| || | ||||||||| ||||||| |
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| T |
23682988 |
cttctcagagtcttaagcagttttggttttaatgataaatttttctcttggattaatacaat |
23683049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 23851923 - 23851762
Alignment:
| Q |
18 |
ttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaattt |
117 |
Q |
| |
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||||||||| |||||||| ||||| | || ||| ||| |||||| |||||||||| ||||| || |||||||||||||| | || || || || || |
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| T |
23851923 |
ttcagaagccatcaatcaacttcacaacaagtcttttgctggaaatctagctttcaaagtagatatttcaaaagcttttgacactttagaatggaagttc |
23851824 |
T |
|
| Q |
118 |
cttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaat |
179 |
Q |
| |
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||||| || || ||||| | |||||||||||||||| || | ||||||||| ||||||| |
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|
| T |
23851823 |
cttctcagagtcttaagcagttttggttttaatgataaatttttctcttggattaatacaat |
23851762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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