View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_3 (Length: 529)
Name: NF10207_low_3
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 26 - 513
Target Start/End: Original strand, 52062618 - 52063104
Alignment:
| Q |
26 |
gtgatcctaacttgtcaggatgattaacataaagtttgttgatatatttgggatttggatcaggaacatagaactcagcagctgagcgatcggggatgcc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52062618 |
gtgatcctaacttgtcaggatgattaacataaagtttgttgatatatttgggatttggatcaggaacatagaactcagcagctgagcgatcggggatgcc |
52062717 |
T |
|
| Q |
126 |
tatttcccacaatgttgggccatctcttggtggctcataaacaagatcaccaatatctatgtcacagcctgtttaatttcacataaacaaaatacacaaa |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52062718 |
tatttcccacaatgttgggccatctcttggtggctcataaacaagatcaccaatatctatgtcacagcctgtttaatttcacataaacaaaatacacaa- |
52062816 |
T |
|
| Q |
226 |
cactaattaacacaaaaattgtctgcagtttataaaagaaaataactaaattgattgatgaattaataccttctgttatgctaattactacatcatattt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52062817 |
cactaattaacacaaaaattgtctgcagtttataaaagaaaataactaaattgattgatgaattaataccttctgttatgctaattactacatcatattt |
52062916 |
T |
|
| Q |
326 |
atagtcaccaataaaaccaggcacccatgcataaaaattatagtcgccaacatgtatattgctaatcgagaaatagccatcatcatctgctttagcccaa |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52062917 |
atagtcaccaataaaaccaggcacccatgcataaaaattatagtcaccaacatgtatattgctaatcgagaaatagccatcatcatctgctttagcccaa |
52063016 |
T |
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| Q |
426 |
aactgataattctgataacaatttgatgtaaatacaagttagctagcagtttcttttagccatacatataaaagttcctaacatatat |
513 |
Q |
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| T |
52063017 |
aactgataattctgataacaatttgatgtaaatacaagttagctagcagtttcttttagccatacatataaaagttcctaacatatat |
52063104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 52047859 - 52047960
Alignment:
| Q |
75 |
gggatttggatcaggaacatagaactcagcagctgagcgatcggggatgcctatttcccacaatgttgggccatctcttggtggctcataaacaagatca |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||| |
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| T |
52047859 |
gggatttggatcaggaacatagaactcagcagctgagcgatcagggatgcctatttcccacagtgtagggccatgtcttggtggctcataaacaagctca |
52047958 |
T |
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| Q |
175 |
cc |
176 |
Q |
| |
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|| |
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| T |
52047959 |
cc |
52047960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 52069359 - 52069459
Alignment:
| Q |
76 |
ggatttggatcaggaacatagaactcagcagctgagcgatcggggatgcctatttcccacaatgttgggccatctcttggtggctcataaacaagatcac |
175 |
Q |
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||||| ||||||||| |||| || || || || || | ||| || |||||||||||||||||||| |||||||| ||||| || ||||| ||||| |||| |
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| T |
52069359 |
ggattgggatcaggagcataaaattctgcggcggatctatcaggaatgcctatttcccacaatgtggggccatcccttggaggttcatatacaagttcac |
52069458 |
T |
|
| Q |
176 |
c |
176 |
Q |
| |
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| |
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| T |
52069459 |
c |
52069459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 28207896 - 28207987
Alignment:
| Q |
71 |
atttgggatttggatcaggaacatagaactcagcagctgagcgatcggggatgcctatttcccacaatgttgggccatctcttggtggctca |
162 |
Q |
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|||| ||||| ||||| |||||||||||||||||||| |||||||| || || || || ||||| |||||||| ||||||||||| |||||| |
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| T |
28207896 |
attttggattaggatctggaacatagaactcagcagcagagcgatcaggaattccaatctcccataatgttggaccatctcttggaggctca |
28207987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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