View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_37 (Length: 250)
Name: NF10207_low_37
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 25601824 - 25602048
Alignment:
| Q |
20 |
cccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaata |
119 |
Q |
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| T |
25601824 |
cccactataaagagttttgcggcattcgtctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaaca |
25601923 |
T |
|
| Q |
120 |
tccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgataatgatctcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25601924 |
tccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgatagtgatctcat |
25602023 |
T |
|
| Q |
220 |
tctccaatgtgtttcttcatctcac |
244 |
Q |
| |
|
|||||||||||||||||||| |||| |
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|
| T |
25602024 |
tctccaatgtgtttcttcatgtcac |
25602048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 25597049 - 25597252
Alignment:
| Q |
50 |
tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgt---------gatggtaatatccagcctcgactcctcaaaa |
140 |
Q |
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||||||||||| ||||||||||||||| || ||||| || ||||||||||||||||| || ||||||||||||| | || ||||||||||| |
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| T |
25597049 |
tctaagattttaactcttcgtgatagcacaacttcactgcatgctcttgatcttgaccgtacaccctatgatggtaatatcccgtctgaactcctcaaaa |
25597148 |
T |
|
| Q |
141 |
agattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgataatgatctcattctccaatgtgtttcttcatc |
240 |
Q |
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|||| ||| | |||||||| |||||||||||||| || | ||||||||| ||| |||||||||||||| || ||||||||| || ||||||||||||| |
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| T |
25597149 |
agatattagactatgtttcttctcataattcccaccttcgggaattaggaatctctgttaggggtgatagtggtctcattcttcattgtgtttcttcatg |
25597248 |
T |
|
| Q |
241 |
tcac |
244 |
Q |
| |
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|||| |
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|
| T |
25597249 |
tcac |
25597252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 36636885 - 36636745
Alignment:
| Q |
50 |
tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa |
149 |
Q |
| |
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||||| || |||||||||||||||| |||| || || || | ||||||||||||||| || ||||||| || |||||| |||||| ||||||||||||| |
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| T |
36636885 |
tctaacatattgactcttcgtgatacctcaactgcactgcacgctcttgatcttgaccgtcatggtaacattgagcctcaactccttaaaaagattttaa |
36636786 |
T |
|
| Q |
150 |
agtatgtttcctctcataattcccaactccacgaattagga |
190 |
Q |
| |
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| ||||||||||| |||||| |||| ||||| || |||||| |
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| T |
36636785 |
actatgtttcctcccataatacccacctccaggatttagga |
36636745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 36643580 - 36643440
Alignment:
| Q |
50 |
tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa |
149 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||| || | ||||| ||||||| || |||| |||| | |||| |||||| ||||||||||||| |
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| T |
36643580 |
tctaacattttgactcttcgcaatagctcaacttctctgcaagctctcaatcttgatcgtcgtggtgatattgaacctcaactccttaaaaagattttaa |
36643481 |
T |
|
| Q |
150 |
agtatgtttcctctcataattcccaactccacgaattagga |
190 |
Q |
| |
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| ||| ||| ||| |||||| |||| ||||||||||||||| |
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| T |
36643480 |
attatatttgctcccataatacccacctccacgaattagga |
36643440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 36613268 - 36613165
Alignment:
| Q |
77 |
tcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaac |
176 |
Q |
| |
|
|||||| ||||| |||| |||||| |||||||| |||||||| |||||||| |||| ||||||||||| || ||||||||||| ||||| |||| | |
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| T |
36613268 |
tcagctgcattggatgcccttgattttgactgtagaggtaatattgagcctcgaatccttaaaaagattttgaattatgtttcctcagataatacccacc |
36613169 |
T |
|
| Q |
177 |
tcca |
180 |
Q |
| |
|
|||| |
|
|
| T |
36613168 |
tcca |
36613165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 36668548 - 36668463
Alignment:
| Q |
50 |
tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcct |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | ||||||| ||||| || |||||||| | | ||||||||||| |
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| T |
36668548 |
tctaagattttgactcttcgtgatagctcaactgcattgcgcgttcttgatgttgaccgtaatggtaattttgaacctcgactcct |
36668463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 35968458 - 35968566
Alignment:
| Q |
50 |
tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa |
149 |
Q |
| |
|
||||||||||||||||||||||||| |||| | || || | ||||||||| ||||| || |||||||||| || ||| |||||| ||||| ||||| |
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| T |
35968458 |
tctaagattttgactcttcgtgatacctcaattccactgcaagctcttgatattgaccgtcatggtaatattgagtctcaactccttgaaaaggttttag |
35968557 |
T |
|
| Q |
150 |
agtatgttt |
158 |
Q |
| |
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| ||||||| |
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| T |
35968558 |
actatgttt |
35968566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 36909764 - 36909831
Alignment:
| Q |
123 |
agcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga |
190 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||| | || |||||| |||| ||||| ||||||||| |
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|
| T |
36909764 |
agcctcaactccttaaaaagattttaaactatgttacttcccataatacccacctccatgaattagga |
36909831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 19658280 - 19658151
Alignment:
| Q |
51 |
ctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaa |
150 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| | || |||||||||||| || ||||| |||| |||||||| |||| |||||||||||| | |
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|
| T |
19658280 |
ctaagattttgactcttcgtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttaga |
19658181 |
T |
|
| Q |
151 |
gtatgtttcctctcataattcccaactcca |
180 |
Q |
| |
|
||||||| ||| |||||| |||| ||||| |
|
|
| T |
19658180 |
ttatgtttgctcacataatacccacctcca |
19658151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 19675119 - 19674990
Alignment:
| Q |
51 |
ctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaa |
150 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| | || |||||||||||| || ||||| |||| |||||||| |||| |||||||||||| | |
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| T |
19675119 |
ctaagattttgactcttcgtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttaga |
19675020 |
T |
|
| Q |
151 |
gtatgtttcctctcataattcccaactcca |
180 |
Q |
| |
|
||||||| ||| |||||| |||| ||||| |
|
|
| T |
19675019 |
ttatgtttgctcacataatacccacctcca |
19674990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 42602822 - 42602730
Alignment:
| Q |
50 |
tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaag |
142 |
Q |
| |
|
||||||||||||||||||||||||| |||| || || || |||||||||||||| || || |||||| ||| |||| | |||||| |||||| |
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|
| T |
42602822 |
tctaagattttgactcttcgtgatacctcaactgcactgcatgctcttgatcttcaccgtcatggtagtattgagccgcaactccttaaaaag |
42602730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 33840223 - 33840185
Alignment:
| Q |
50 |
tctaagattttgactcttcgtgatagctcagcttcattg |
88 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
33840223 |
tctaagattttgactcttcgtgataactcagctgcattg |
33840185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 33844215 - 33844153
Alignment:
| Q |
50 |
tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgat |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || || || ||||||| |||| |||||| |
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|
| T |
33844215 |
tctaagattttgactcttcgtgataactcagctgcactgcatattcttgattttgagtgtgat |
33844153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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