View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10207_low_38 (Length: 247)

Name: NF10207_low_38
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10207_low_38
NF10207_low_38
[»] chr8 (5 HSPs)
chr8 (196-247)||(18838720-18838771)
chr8 (184-235)||(28009229-28009280)
chr8 (184-235)||(28066532-28066583)
chr8 (185-235)||(24190795-24190845)
chr8 (205-234)||(30202037-30202066)
[»] chr3 (3 HSPs)
chr3 (181-235)||(32464866-32464920)
chr3 (196-235)||(42448763-42448802)
chr3 (205-237)||(46181091-46181123)
[»] chr5 (3 HSPs)
chr5 (185-232)||(41485673-41485720)
chr5 (185-235)||(39298427-39298477)
chr5 (181-237)||(5655422-5655478)
[»] chr7 (4 HSPs)
chr7 (181-235)||(48582105-48582159)
chr7 (176-236)||(15328975-15329035)
chr7 (181-224)||(15328824-15328867)
chr7 (185-235)||(36645046-36645096)
[»] scaffold0318 (1 HSPs)
scaffold0318 (185-237)||(2025-2077)
[»] chr6 (1 HSPs)
chr6 (181-227)||(35108283-35108329)
[»] chr4 (2 HSPs)
chr4 (181-235)||(42451824-42451878)
chr4 (185-226)||(4710288-4710329)
[»] chr2 (1 HSPs)
chr2 (185-235)||(34997081-34997131)


Alignment Details
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 18838720 - 18838771
Alignment:
Q  196 cataaaaaattgctcactcccaaccaaacttccaaaaatatcattgcttgat 247  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  18838720 cataaaaaattgctcactcccaaccaaactttcgaaaatatcattgcttgat 18838771  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 28009280 - 28009229
Alignment:
Q  184 atgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    ||||||||||  ||| ||||||||||| ||||||||||||||| ||||||||    
T  28009280 atgctcttctcccatcaaaaattgctcgctcccaaccaaactttcaaaaata 28009229  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 28066583 - 28066532
Alignment:
Q  184 atgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    ||||||||||  ||| ||||||||||| ||||||||||||||| ||||||||    
T  28066583 atgctcttctcccatcaaaaattgctcgctcccaaccaaactttcaaaaata 28066532  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 24190795 - 24190845
Alignment:
Q  185 tgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    |||||||||  ||||||||||||||  |||||||||||||||| |||||||    
T  24190795 tgctcttctcccataaaaaattgcttgctcccaaccaaacttcaaaaaata 24190845  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 30202066 - 30202037
Alignment:
Q  205 ttgctcactcccaaccaaacttccaaaaat 234  Q
    ||||||||||||||||||||||||||||||    
T  30202066 ttgctcactcccaaccaaacttccaaaaat 30202037  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 32464866 - 32464920
Alignment:
Q  181 attatgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    |||||||||||||| |||||||||||| || ||||||| ||||||||||||||||    
T  32464866 attatgctcttctttcataaaaaattgttcgctcccaatcaaacttccaaaaata 32464920  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 42448802 - 42448763
Alignment:
Q  196 cataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  42448802 cataaaaaattgctcgctcccaaccaaacttccaaaaata 42448763  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 46181123 - 46181091
Alignment:
Q  205 ttgctcactcccaaccaaacttccaaaaatatc 237  Q
    |||||| ||||||||||||||||||||||||||    
T  46181123 ttgctcgctcccaaccaaacttccaaaaatatc 46181091  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 41485720 - 41485673
Alignment:
Q  185 tgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaa 232  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  41485720 tgctcttctcacatcaaaaatggctcactcccaaccaaacttccaaaa 41485673  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 39298427 - 39298477
Alignment:
Q  185 tgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    |||||||||| |||||||||||||||||||||||| ||| |||| ||||||    
T  39298427 tgctcttcttccataaaaaattgctcactcccaactaaatttcctaaaata 39298477  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 5655478 - 5655422
Alignment:
Q  181 attatgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaatatc 237  Q
    |||||||||||||  ||||||||||| ||| ||| ||| ||||||||| ||||||||    
T  5655478 attatgctcttctcccataaaaaattactcgctctcaatcaaacttccgaaaatatc 5655422  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 48582105 - 48582159
Alignment:
Q  181 attatgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    |||||||||||||| ||  || | |||||||||||||||||||||||||||||||    
T  48582105 attatgctcttcttccaataagatttgctcactcccaaccaaacttccaaaaata 48582159  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 15329035 - 15328975
Alignment:
Q  176 gaaggattatgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaatat 236  Q
    |||| |||||||||||||  |||||||||||| ||||||||| ||||||||| ||| ||||    
T  15329035 gaagaattatgctcttctcccataaaaaattgttcactcccatccaaacttctaaatatat 15328975  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 15328824 - 15328867
Alignment:
Q  181 attatgctcttcttacataaaaaattgctcactcccaaccaaac 224  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||    
T  15328824 attatgctattcttccataaaaaattgttcactcccaaccaaac 15328867  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 36645046 - 36645096
Alignment:
Q  185 tgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    |||||||||  ||||||||||||||| |||||||| |||||||| ||||||    
T  36645046 tgctcttctctcataaaaaattgctcgctcccaacgaaacttccgaaaata 36645096  T

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Target: scaffold0318 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 2025 - 2077
Alignment:
Q  185 tgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaatatc 237  Q
    |||||||||| |||||||||||| || ||| ||||||||||| ||||||||||    
T  2025 tgctcttcttccataaaaaattgttcgctctcaaccaaactttcaaaaatatc 2077  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 35108283 - 35108329
Alignment:
Q  181 attatgctcttcttacataaaaaattgctcactcccaaccaaacttc 227  Q
    |||||||||||||| ||| ||||||||||| || |||||||||||||    
T  35108283 attatgctcttcttccatcaaaaattgctcgcttccaaccaaacttc 35108329  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 42451824 - 42451878
Alignment:
Q  181 attatgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    |||||||||||||  ||||||||||||||  ||||||||||||||| | ||||||    
T  42451824 attatgctcttctcccataaaaaattgcttgctcccaaccaaactttcgaaaata 42451878  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 4710288 - 4710329
Alignment:
Q  185 tgctcttcttacataaaaaattgctcactcccaaccaaactt 226  Q
    |||||||||  ||||||||||||||| |||||||||||||||    
T  4710288 tgctcttctcccataaaaaattgctcgctcccaaccaaactt 4710329  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 34997131 - 34997081
Alignment:
Q  185 tgctcttcttacataaaaaattgctcactcccaaccaaacttccaaaaata 235  Q
    |||||||||  ||| |||| ||| |||||||||||||||||||||||||||    
T  34997131 tgctcttctcccattaaaatttgttcactcccaaccaaacttccaaaaata 34997081  T

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