View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_40 (Length: 241)
Name: NF10207_low_40
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 713941 - 714165
Alignment:
| Q |
1 |
aatagatcaatgaggtggtttttctttccttcttactatttatactgaaaagcaaaaacaattaaaccttgataagaatgatcagaaacttattaaacaa |
100 |
Q |
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| T |
713941 |
aatagatcaatgaggtggtttttctttccttcttactatttatactgaaaagcaaaaacaattaaaccttgataagaatgatcagaaacttattaaacaa |
714040 |
T |
|
| Q |
101 |
ggcatgaagtcgtgaacaaaatttactttagctttattacataaatatgggccagacataatactacacacactctagcattgtgattggcaaataaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714041 |
ggcatgaagtcgtgaacaaaatttactttagctttattacataaatatgggccagacataatactacacacactctagcattgtgattggcaaataaaga |
714140 |
T |
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| Q |
201 |
gaatgtttgtaatcttatatgtaat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
714141 |
gaatgtttgtaatcttatatgtaat |
714165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 3763790 - 3763868
Alignment:
| Q |
1 |
aatagatcaatgaggtggtttttctttccttcttactatttatactgaaaagcaaaaacaattaaaccttgataagaat |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3763790 |
aatagatcaatgaggtggtttttctttccttcttactatttatactgaaaagcaaaaacaattaaaccttgataagaat |
3763868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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