View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_43 (Length: 239)
Name: NF10207_low_43
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 3675039 - 3675260
Alignment:
| Q |
7 |
aacatattagaataatgaagcaaaactt-aattattgtgttagtttgagagtttctaatcagactcaacaaaactaatagatttnnnnnnnt---aaaat |
102 |
Q |
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| T |
3675039 |
aacatattagaataatgaagcaaacctttaattattgtgttagtgtgagagtttctaatcagactcaacaaaactaatagatttaaaaaaaataaaaaat |
3675138 |
T |
|
| Q |
103 |
taaatgtgtttaataatatagaacatcagatcaaaattatttggccattagatcttgtaattgatcaggtttgactttgagtgagtttatgtaccaaaaa |
202 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3675139 |
taagtgtgtttaataatatagaacatcagatcaaaattatttggccattagatcttgtaattgatcaggtttgactttgagtgagtttatgtaccaaaaa |
3675238 |
T |
|
| Q |
203 |
tgataagtcctaatgattattt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
3675239 |
tgataagtcctaatgattattt |
3675260 |
T |
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