View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10207_low_45 (Length: 237)

Name: NF10207_low_45
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10207_low_45
NF10207_low_45
[»] chr8 (9 HSPs)
chr8 (1-224)||(18838946-18839174)
chr8 (55-100)||(18838893-18838938)
chr8 (1-143)||(18838724-18838866)
chr8 (55-143)||(28009176-28009264)
chr8 (55-143)||(28066479-28066567)
chr8 (54-144)||(30943615-30943703)
chr8 (60-102)||(15892468-15892510)
chr8 (52-164)||(6400764-6400875)
chr8 (53-101)||(14392478-14392526)
[»] chr1 (7 HSPs)
chr1 (51-140)||(42791352-42791441)
chr1 (52-164)||(45797529-45797641)
chr1 (54-139)||(15470905-15470990)
chr1 (58-139)||(41515185-41515266)
chr1 (55-102)||(21761151-21761197)
chr1 (53-116)||(32306360-32306423)
chr1 (76-164)||(38041122-38041210)
[»] scaffold0318 (1 HSPs)
scaffold0318 (52-164)||(2139-2252)
[»] chr6 (5 HSPs)
chr6 (51-164)||(7723798-7723911)
chr6 (52-100)||(864391-864439)
chr6 (52-103)||(2031632-2031683)
chr6 (52-99)||(32879728-32879775)
chr6 (92-164)||(7723678-7723750)
[»] chr5 (6 HSPs)
chr5 (56-136)||(18398797-18398877)
chr5 (76-139)||(7733420-7733483)
chr5 (54-136)||(17441254-17441336)
chr5 (50-103)||(20419541-20419594)
chr5 (54-102)||(7148483-7148531)
chr5 (76-124)||(23229522-23229570)
[»] chr2 (7 HSPs)
chr2 (60-146)||(26425107-26425192)
chr2 (55-141)||(26618254-26618340)
chr2 (77-139)||(34233604-34233666)
chr2 (20-103)||(35204363-35204445)
chr2 (55-124)||(11804959-11805029)
chr2 (53-95)||(21557600-21557642)
chr2 (51-139)||(7020150-7020238)
[»] chr7 (6 HSPs)
chr7 (53-164)||(48582103-48582213)
chr7 (54-124)||(2377196-2377266)
chr7 (53-131)||(7414790-7414867)
chr7 (83-121)||(31589470-31589508)
chr7 (60-100)||(23475139-23475179)
chr7 (88-164)||(36645040-36645116)
[»] chr4 (9 HSPs)
chr4 (55-160)||(4965373-4965479)
chr4 (87-167)||(4710279-4710359)
chr4 (92-163)||(4965269-4965340)
chr4 (53-111)||(25554861-25554919)
chr4 (52-102)||(25554869-25554919)
chr4 (50-103)||(5314388-5314441)
chr4 (76-113)||(46844612-46844649)
chr4 (54-102)||(20821869-20821917)
chr4 (55-103)||(32304743-32304791)
[»] chr3 (6 HSPs)
chr3 (52-102)||(38810124-38810174)
chr3 (76-166)||(46181061-46181151)
chr3 (50-103)||(51171078-51171131)
chr3 (53-100)||(1639403-1639449)
chr3 (86-164)||(42448741-42448819)
chr3 (54-166)||(14464063-14464175)
[»] scaffold0110 (1 HSPs)
scaffold0110 (58-102)||(25924-25968)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 18838946 - 18839174
Alignment:
Q  1 attcacattgtttataac-tacatgagttaactcacgcaatgtttataacct----tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaa 95  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||||    || |||||||||||||||||||||||||||||||||||||||||    
T  18838946 attcacaatgtttataacctacatgagttaactcacgcaaggtttataacctacgttgtgtgagttaagtcacgctgagtttaacacatgcgtgacttaa 18839045  T
Q  96 ctcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattcctagtataaagcttaatttgggtttctccta 195  Q
    |||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18839046 ctcatgcaggggtattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattcctagtataaagcttaatttgggtttctcgta 18839145  T
Q  196 aagattgtcttttgctttctctcatggct 224  Q
    |||||||||||||||||||||||||||||    
T  18839146 aagattgtcttttgctttctctcatggct 18839174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 18838893 - 18838938
Alignment:
Q  55 gtgagttaagtcacgctgagtttaacacatgcgtgacttaactcac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  18838893 gtgagttaagtcacgctgagtttaacacatgcgtaacttaactcac 18838938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 18838866 - 18838724
Alignment:
Q  1 attcacattgtttataac-tacatgagttaactcacgcaatgtttataaccttgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactca 99  Q
    ||||||| |||||||||| || ||||||||||||| |||| ||||||||| || |||||||||| |||| |   |||||  || | ||||| |||| |||    
T  18838866 attcacactgtttataacctaaatgagttaactcatgcaaggtttataac-ttacgtgagttaactcacacatggtttataacctacgtgagttaaatca 18838768  T
Q  100 cgcatggatattttcggaagtttggatgggagtgagcaaatttt 143  Q
     |||  |||||||||| |||||||| ||||||||||||| ||||    
T  18838767 agcaatgatattttcgaaagtttggttgggagtgagcaattttt 18838724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 28009176 - 28009264
Alignment:
Q  55 gtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaatttt 143  Q
    ||||||||| |||||||| |||  |||| ||||||| |||||||||||| || |||||| | |||||||| |||||| |||||| ||||    
T  28009176 gtgagttaactcacgctgggttatacacctgcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaattttt 28009264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 28066479 - 28066567
Alignment:
Q  55 gtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaatttt 143  Q
    ||||||||| |||||||| |||  |||| ||||||| |||||||||||| || |||||| | |||||||| |||||| |||||| ||||    
T  28066479 gtgagttaactcacgctgggttatacacctgcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaattttt 28066567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 30943615 - 30943703
Alignment:
Q  54 cgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaatttta 144  Q
    ||||| ||||||||||||| ||||||||||||||||| |||| |||||  |||  ||||| | |||||||| ||||||||| ||| |||||    
T  30943615 cgtgacttaagtcacgctgggtttaacacatgcgtgaattaagtcacg--tggggattttggaaagtttggttgggagtgaacaattttta 30943703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 15892510 - 15892468
Alignment:
Q  60 ttaagtcacgctgagtttaacacatgcgtgacttaactcacgc 102  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  15892510 ttaagtcacgctgcgtttaacacatgcttgacttaactcacgc 15892468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 6400764 - 6400875
Alignment:
Q  52 tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgag 151  Q
    |||||||||||||||| || | ||||||||  |  |||| |||||||||||| ||  |||||||||||||  ||||| || ||||||||||| ||  |||    
T  6400764 tgcgtgagttaagtcatgcag-gtttaacatctttgtgagttaactcacgcaggggcattttcggaagttcagatggaagcgagcaaatttttttgggag 6400862  T
Q  152 aagagcagaattc 164  Q
    |||||||| ||||    
T  6400863 aagagcagtattc 6400875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 14392478 - 14392526
Alignment:
Q  53 gcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacg 101  Q
    |||||| |||||||||||||  | ||||||||||||||||||| |||||    
T  14392478 gcgtgacttaagtcacgctggatataacacatgcgtgacttaagtcacg 14392526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 42791441 - 42791352
Alignment:
Q  51 ttgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaat 140  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||| |||||    
T  42791441 ttgcatgagttaagtcacgttgagtttaacacatgcgtgacttaactcacgcaaggatatttttgaaagtttggttgggagtgaacaaat 42791352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 45797641 - 45797529
Alignment:
Q  52 tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgag 151  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||| |||    |||||| | |||||||| || |||||| |||||||||||  |||    
T  45797641 tgcgtgtgttaagtcacgttgagtttaacacatacgtgacttaactcatgcacatgtattttagaaagtttggttgagagtgaacaaattttattgggag 45797542  T
Q  152 aagagcagaattc 164  Q
    ||||||| |||||    
T  45797541 aagagcataattc 45797529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 15470990 - 15470905
Alignment:
Q  54 cgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgc-atggatattttcggaagtttggatgggagtgagcaaa 139  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||| | || |||||||| |||||||| ||||| | ||||||    
T  15470990 cgtgagttaactcacgctg-gtttaacacatgcgtgagttaactcacgctaggggtattttcgaaagtttggttgggaataagcaaa 15470905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 41515185 - 41515266
Alignment:
Q  58 agttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaa 139  Q
    |||||| ||||||||||| ||||||  |||||| |||||||||||| || |||||| | |||||||| |||||| |||||||    
T  41515185 agttaactcacgctgagtataacacccgcgtgagttaactcacgcacgggtattttggaaagtttggttgggagcgagcaaa 41515266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 21761151 - 21761197
Alignment:
Q  55 gtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgc 102  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  21761151 gtgagttaactcacgctg-gtttaacacatgcgtgagttaactcacgc 21761197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 32306423 - 32306360
Alignment:
Q  53 gcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcgg 116  Q
    |||||||||||||  |||  | |||||||||||||||| |||||||||||| || |||||||||    
T  32306423 gcgtgagttaagttgcgcataatttaacacatgcgtgagttaactcacgcaagggtattttcgg 32306360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 38041210 - 38041122
Alignment:
Q  76 ttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattc 164  Q
    ||||||||||||||| ||||||||||||||   ||||||  |||||||| ||| | ||||||||   | ||  ||||||||||||||||    
T  38041210 ttaacacatgcgtgaattaactcacgcatgagcattttcaaaagtttggttggaaatgagcaaaacgtgttgggagaagagcagaattc 38041122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 2139 - 2252
Alignment:
Q  52 tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgc-atggatattttcggaagtttggatgggagtgagcaaattttattatga 150  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||  |||  |||| ||||||||||||||||| ||||||||||||||| || ||  ||    
T  2139 tgcgtgagttaaatcacattgagtttaacacatgcgtgacttaacctacgttatgggtattttcggaagtttggttgggagtgagcaaatcttgttggga 2238  T
Q  151 gaagagcagaattc 164  Q
    |||||| |||||||    
T  2239 gaagagtagaattc 2252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 7723798 - 7723911
Alignment:
Q  51 ttgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatga 150  Q
    |||| |||||||||||||||| || |||| ||||||||||||||||||||||  ||  | |||  ||||||||  ||||||||||||||| || ||| ||    
T  7723798 ttgcatgagttaagtcacgctaagcttaagacatgcgtgacttaactcacgccaggggaattttagaagtttgattgggagtgagcaaatcttgttagga 7723897  T
Q  151 gaagagcagaattc 164  Q
    ||||||||||||||    
T  7723898 gaagagcagaattc 7723911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 864439 - 864391
Alignment:
Q  52 tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcac 100  Q
    ||||||||||||||||| |||||||||||| ||  ||||||||||||||    
T  864439 tgcgtgagttaagtcacactgagtttaacatatatgtgacttaactcac 864391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 2031632 - 2031683
Alignment:
Q  52 tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgca 103  Q
    |||||||||||| |||||||||| |||||||  ||||||||||| |||||||    
T  2031632 tgcgtgagttaactcacgctgagattaacactagcgtgacttaagtcacgca 2031683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 32879728 - 32879775
Alignment:
Q  52 tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactca 99  Q
    |||||||||||| |||||||||  ||||||||||||||| ||||||||    
T  32879728 tgcgtgagttaactcacgctgaaattaacacatgcgtgagttaactca 32879775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 7723750 - 7723678
Alignment:
Q  92 ttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattc 164  Q
    ||||| ||||||| | ||||||| ||||||||| |||||  |||||| ||||  || ||||||||||||||||    
T  7723750 ttaacacacgcatcggtattttcagaagtttggttgggaacgagcaatttttgataggagaagagcagaattc 7723678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 18398877 - 18398797
Alignment:
Q  56 tgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagc 136  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||||||  ||||| |||||||||| ||||| |||||    
T  18398877 tgagttaactcacgctgagtataacacatgcgtgagttaacttacgcatgggcatttttggaagtttggttgggaatgagc 18398797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 7733420 - 7733483
Alignment:
Q  76 ttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaa 139  Q
    |||||||||||| || |||||||||||||| ||||||||| |||||||| || ||| |||||||    
T  7733420 ttaacacatgcgcgagttaactcacgcatgaatattttcgaaagtttggctgagagcgagcaaa 7733483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 17441336 - 17441254
Alignment:
Q  54 cgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagc 136  Q
    ||||| |||||||||| ||| |||||||||||||||| ||||||||| ||  | |||||| |  |||||| ||||||||||||    
T  17441336 cgtgacttaagtcacgttgaatttaacacatgcgtgagttaactcacacagaggtatttttgtcagtttgtatgggagtgagc 17441254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 20419541 - 20419594
Alignment:
Q  50 cttgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgca 103  Q
    |||||||||||||| ||||||||   ||||||| ||||||| ||||||||||||    
T  20419541 cttgcgtgagttaactcacgctggaattaacacttgcgtgagttaactcacgca 20419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 7148483 - 7148531
Alignment:
Q  54 cgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgc 102  Q
    ||||| |||||||| | || ||||||||||||||||| |||||||||||    
T  7148483 cgtgacttaagtcatgttgggtttaacacatgcgtgagttaactcacgc 7148531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 23229522 - 23229570
Alignment:
Q  76 ttaacacatgcgtgacttaactcacgcatggatattttcggaagtttgg 124  Q
    ||||||||||| ||| ||||||||| |||| | ||||||||||||||||    
T  23229522 ttaacacatgcatgagttaactcacacatgaacattttcggaagtttgg 23229570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 26425107 - 26425192
Alignment:
Q  60 ttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttatt 146  Q
    |||||||| || |||||||||||||||||||||||||||| |||  |||||||||| |||||||| ||||| ||| ||||| |||||    
T  26425107 ttaagtcatgccgagtttaacacatgcgtgacttaactcatgca-agatattttcgaaagtttggttgggaatgaacaaatcttatt 26425192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 26618254 - 26618340
Alignment:
Q  55 gtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacg-catggatattttcggaagtttggatgggagtgagcaaatt 141  Q
    ||||||||| |||| ||| ||||||||||||||||| |||||||||| || ||  |||||| ||||||||| ||||||||||||||||    
T  26618254 gtgagttaactcacactg-gtttaacacatgcgtgagttaactcacgccaggggcattttcagaagtttggttgggagtgagcaaatt 26618340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 34233604 - 34233666
Alignment:
Q  77 taacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaa 139  Q
    |||||| ||||||| ||||||||||||||  |||||| |||||||||| ||| ||||||||||    
T  34233604 taacacctgcgtgagttaactcacgcatgagtattttgggaagtttggttggaagtgagcaaa 34233666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 35204363 - 35204445
Alignment:
Q  20 acatgagttaactcacgcaatgtttataaccttgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgca 103  Q
    |||||||||||||||||||  |||||||||| |||| ||||||| || |||||||||||  || |||| || ||||||| ||||    
T  35204363 acatgagttaactcacgcatggtttataacc-tgcgcgagttaactcgcgctgagtttataacttgcgagagttaactcccgca 35204445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 11805029 - 11804959
Alignment:
Q  55 gtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgc-atggatattttcggaagtttgg 124  Q
    |||||||||||||||| | |||||| ||||| |||| ||||||||||| | || |||||||| ||||||||    
T  11805029 gtgagttaagtcacgcagtgtttaatacatgtgtgagttaactcacgctaggggtattttcgaaagtttgg 11804959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 21557600 - 21557642
Alignment:
Q  53 gcgtgagttaagtcacgctgagtttaacacatgcgtgacttaa 95  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||    
T  21557600 gcgtgacttaagtcacgctgagtttaacacctgcatgacttaa 21557642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 7020150 - 7020238
Alignment:
Q  51 ttgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaa 139  Q
    ||||||||||||| |||||||| || |||||| | | ||| ||||||||||||  ||||||||   || ||||| |||||| |||||||    
T  7020150 ttgcgtgagttaactcacgctgtgtataacacctacatgagttaactcacgcagagatattttaaaaattttggttgggagcgagcaaa 7020238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 48582213 - 48582103
Alignment:
Q  53 gcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacg-catggatattttcggaagtttggatgggagtgagcaaattttattatgag 151  Q
    |||||| ||||||||||||||||||||||||| | |  ||||||||||| ||  | |||||| |||||||||| ||||||||||||||| |||||   ||    
T  48582213 gcgtgacttaagtcacgctgagtttaacacatacat--cttaactcacgtcagtggtatttttggaagtttggttgggagtgagcaaatcttattggaag 48582116  T
Q  152 aagagcagaattc 164  Q
    ||||||| |||||    
T  48582115 aagagcataattc 48582103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 2377266 - 2377196
Alignment:
Q  54 cgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttgg 124  Q
    |||||||||| ||| ||||||| |||||  ||||||| |||||||||||| || |||||| ||||||||||    
T  2377266 cgtgagttaactcatgctgagtataacatttgcgtgagttaactcacgcaggggtattttgggaagtttgg 2377196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 7414790 - 7414867
Alignment:
Q  53 gcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggag 131  Q
    ||||||||||| |||||| || || |||||||| |||| |||||||  ||||||  |||||||||||||||| ||||||    
T  7414790 gcgtgagttaactcacgcagaatt-aacacatgtgtgagttaactcgtgcatgggcattttcggaagtttggttgggag 7414867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 31589508 - 31589470
Alignment:
Q  83 atgcgtgacttaactcacgcatggatattttcggaagtt 121  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  31589508 atgcgtgacttaactcacgcatgggtattttgggaagtt 31589470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 23475139 - 23475179
Alignment:
Q  60 ttaagtcacgctgagtttaacacatgcgtgacttaactcac 100  Q
    |||||||||  ||||||||||||||||||||||||| ||||    
T  23475139 ttaagtcacaatgagtttaacacatgcgtgacttaagtcac 23475179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 36645116 - 36645040
Alignment:
Q  88 tgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattc 164  Q
    |||| ||| ||||||| || ||||||||||||||| | |||||| |||||| ||||  |  ||||||||||||||||    
T  36645116 tgacataaatcacgcaggggtattttcggaagtttcgttgggagcgagcaattttttatgagagaagagcagaattc 36645040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 4965373 - 4965479
Alignment:
Q  55 gtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacg-catggatattttcggaagtttggatgggagtgagcaaattttattatgagaa 153  Q
    |||| |||| ||||| ||||||||||||||||||||||||||| ||| || || |||||| | |||||||  ||  |||||||||||||||||  |||||    
T  4965373 gtgacttaaatcacgttgagtttaacacatgcgtgacttaacttacgtcacgggtatttttgaaagtttgattgaaagtgagcaaattttattgggagaa 4965472  T
Q  154 gagcaga 160  Q
     ||||||    
T  4965473 tagcaga 4965479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 4710359 - 4710279
Alignment:
Q  87 gtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattccta 167  Q
    ||||||||| |||||||||  |||||||  |||||||| |||||| |||||| ||||  |  |||||||||||||||||||    
T  4710359 gtgacttaagtcacgcatgagtattttcaaaagtttggttgggagcgagcaattttttatgggagaagagcagaattccta 4710279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 4965340 - 4965269
Alignment:
Q  92 ttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaatt 163  Q
    |||||||||||||  ||||||||| |||||||| ||| ||| ||||| ||||  || |||||||||||||||    
T  4965340 ttaactcacgcataaatattttcgaaagtttggttggtagtaagcaatttttgataggagaagagcagaatt 4965269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 25554919 - 25554861
Alignment:
Q  53 gcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatatt 111  Q
    ||||||||||||||||||  |  |||||||  |||||||||||||||||||||| ||||    
T  25554919 gcgtgagttaagtcacgcatatattaacaccagcgtgacttaactcacgcatgggtatt 25554861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 25554869 - 25554919
Alignment:
Q  52 tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgc 102  Q
    |||||||||||||||||||||   |||| | ||||||||||||||||||||    
T  25554869 tgcgtgagttaagtcacgctggtgttaatatatgcgtgacttaactcacgc 25554919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 5314388 - 5314441
Alignment:
Q  50 cttgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgca 103  Q
    |||||||||||||| ||||||||   ||||||| ||||||| ||||||||||||    
T  5314388 cttgcgtgagttaattcacgctggaattaacacttgcgtgagttaactcacgca 5314441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 46844649 - 46844612
Alignment:
Q  76 ttaacacatgcgtgacttaactcacgcatggatatttt 113  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  46844649 ttaacacttgcgtgagttaactcacgcatggatatttt 46844612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 20821869 - 20821917
Alignment:
Q  54 cgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgc 102  Q
    ||||| |||| ||||| || ||||||||||||||||| |||||||||||    
T  20821869 cgtgacttaattcacgttgggtttaacacatgcgtgagttaactcacgc 20821917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 32304791 - 32304743
Alignment:
Q  55 gtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgca 103  Q
    ||||||||| |||||||||  |||||||||| |||| ||||||||||||    
T  32304791 gtgagttaactcacgctgaaattaacacatgtgtgagttaactcacgca 32304743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 38810124 - 38810174
Alignment:
Q  52 tgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgc 102  Q
    |||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  38810124 tgcgtgagttaagttacactgaatttaacacatgcgtgacttaactcacgc 38810174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 46181061 - 46181151
Alignment:
Q  76 ttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattcct 166  Q
    |||||||||| |||| |||| ||||||| ||||||||| |||||||||| |||||| |||||||   ||||  ||||| ||||||||||||    
T  46181061 ttaacacatgtgtgagttaaatcacgcagggatatttttggaagtttggttgggagcgagcaaaacgtattgggagaatagcagaattcct 46181151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 51171078 - 51171131
Alignment:
Q  50 cttgcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgca 103  Q
    ||||||||| ||||||||||||||  ||||||| ||||||| ||||||||||||    
T  51171078 cttgcgtgacttaagtcacgctgaaattaacacgtgcgtgagttaactcacgca 51171131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 1639403 - 1639449
Alignment:
Q  53 gcgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcac 100  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  1639403 gcgtgacttaactcacgctga-tttaacacatgcgtgacttaactcac 1639449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 42448741 - 42448819
Alignment:
Q  86 cgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattc 164  Q
    |||||||||| | |||||||| |||||| |||||||||| |||||| |||||| ||||  |  |||| |||||||||||    
T  42448741 cgtgacttaagttacgcatgggtatttttggaagtttggttgggagcgagcaattttttatgggagacgagcagaattc 42448819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 14464175 - 14464063
Alignment:
Q  54 cgtgagttaagtcacgctgagtttaacacatgcgtgacttaactcacgcatggatattttcggaagtttggatgggagtgagcaaattttattatgagaa 153  Q
    ||||| ||||||||||| ||||||||||  ||  ||| ||||||||||||  || ||||||| |||||  | |||||| |||||||  || ||  |||||    
T  14464175 cgtgacttaagtcacgcagagtttaacatctgtatgagttaactcacgcagagacattttcgaaagttcagttgggagcgagcaaaaattgttgggagaa 14464076  T
Q  154 gagcagaattcct 166  Q
    |||||| ||||||    
T  14464075 gagcagtattcct 14464063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 25924 - 25968
Alignment:
Q  58 agttaagtcacgctgagtttaacacatgcgtgacttaactcacgc 102  Q
    |||||||||||| || |||||||||||||||||||||| ||||||    
T  25924 agttaagtcacgttgcgtttaacacatgcgtgacttaagtcacgc 25968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University