View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10207_low_46 (Length: 236)
Name: NF10207_low_46
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_46 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 17951076 - 17951280
Alignment:
| Q |
24 |
gtacacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17951076 |
gtacacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgttccacggaagaagaaaatcctaa |
17951175 |
T |
|
| Q |
124 |
aaatgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggtcctttg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17951176 |
aaatgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttg |
17951275 |
T |
|
| Q |
224 |
cttct |
228 |
Q |
| |
|
|||| |
|
|
| T |
17951276 |
tttct |
17951280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 18109677 - 18109882
Alignment:
| Q |
18 |
cagtcagtacacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaa |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18109677 |
cagtcggtacacaacttcaaagttttaatgcatcgagctacattggcaatccaaaattatgtggatctcctcttaataattgtaccacggaagaagaaaa |
18109776 |
T |
|
| Q |
118 |
tcctaaaaatgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggt |
217 |
Q |
| |
|
| |||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18109777 |
ttctaaaattactgagaatgaggatgatgaatctataaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggt |
18109876 |
T |
|
| Q |
218 |
cctttg |
223 |
Q |
| |
|
||||| |
|
|
| T |
18109877 |
tctttg |
18109882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 19438204 - 19438392
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19438204 |
caacttcaaagttttaatgcatcgagctacattggcaatcctaaattatgtggagttcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
19438303 |
T |
|
| Q |
129 |
cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggt |
217 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| || ||||| || || |||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
19438304 |
cagagaatgaagatgatgaatctataagagagtcgttgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggt |
19438392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 18148073 - 18148275
Alignment:
| Q |
26 |
acacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
18148073 |
acacaacttcaaagttttaatgcatcgagctacattggcaatcctaaactatgcggagctccccttaataattgtaccacggaagaagaaaatcctggaa |
18148172 |
T |
|
| Q |
126 |
atgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggtcctttgct |
225 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||| || ||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
18148173 |
atgcagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtt |
18148272 |
T |
|
| Q |
226 |
tct |
228 |
Q |
| |
|
||| |
|
|
| T |
18148273 |
tct |
18148275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 18117214 - 18117402
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
18117214 |
caacttcaaagttttaatgcatcaagctacattggcaatccaaaattatgcggcgctcctcttaataactgtaccacggaagaagaaaatcctggaaata |
18117313 |
T |
|
| Q |
129 |
cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggt |
217 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18117314 |
cagagaatgaagatgatgaatctataagagagtcattgtatctaggcatgggagtgggatttgcagtaggtttctgggggatttgtggt |
18117402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 19462438 - 19462637
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
19462438 |
caacttcaaagttttaatgcatcaagctacattggcaatccaaaattatgcggtgctcctcttaataactgtaccacggaagaagaaaatcctggaaata |
19462537 |
T |
|
| Q |
129 |
cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggtcctttgcttct |
228 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| || ||||| | || |||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
19462538 |
cagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggcatttgtggttctttgtttct |
19462637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 19401050 - 19401184
Alignment:
| Q |
95 |
aattgtaccacggaagaagaaaatcctaaaaatgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcag |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
19401050 |
aattgtaccaaggaagaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcag |
19401149 |
T |
|
| Q |
195 |
taggtttctgggggatttgtggtcctttgcttctc |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
19401150 |
taggtttctgggggatttgtggttctttgtttctc |
19401184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 18104751 - 18104937
Alignment:
| Q |
26 |
acacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||| ||||||||||||| ||||||| | |||||||||||||| || |
|
|
| T |
18104751 |
acacaacttcaaagttttaatgcatcaagctacattggcaatcctaaactatgcggagctcctcttaataactgtaccaggaaagaagaaaatcctggaa |
18104850 |
T |
|
| Q |
126 |
atgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggattt |
212 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||| || ||||| | || ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
18104851 |
atgcagagaatgaaaatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggattcttggggattt |
18104937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 17943200 - 17943406
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
17943200 |
caacttcaaagttttaatgcatcgagttacattgggaatcctaaactatgtggagctcctcttaataattgtaccacgaaagaagaaaatcctaaaactg |
17943299 |
T |
|
| Q |
129 |
------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||| |||||||||| ||||| || |||||||||| |||||| |||||||||||||| |
|
|
| T |
17943300 |
caaagccgtccacagagaatgaagatgatgactctataaaagaatcactgtaccttggcatgggggttggatttgcagcaggtttttgggggatttgtgg |
17943399 |
T |
|
| Q |
217 |
tcctttg |
223 |
Q |
| |
|
| ||||| |
|
|
| T |
17943400 |
ttctttg |
17943406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 19394395 - 19394606
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||| |||| |||||||| |||| |||| |||||||||| | ||||||||||||||||||| || |
|
|
| T |
19394395 |
caacttcaaagttttaatgcatcgagttatattgggaatcctaaactatgtggagctccacttagtaattgtaccgcagaagaagaaaatcctaaaactg |
19394494 |
T |
|
| Q |
129 |
ca------------gagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| |||||||| ||||| || ||| |||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19394495 |
caaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtgg |
19394594 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
19394595 |
ttctttgtttct |
19394606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 19352635 - 19352849
Alignment:
| Q |
26 |
acacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||| || | |||||||| ||||||||||||||||||||| | |||||||||||||||| | |
|
|
| T |
19352635 |
acacaacttcaaagttttaatgcatcaagttacattgggaatcctagactatgtggagctcctcttaataattgtaccatgaaagaagaaaatcctaaga |
19352734 |
T |
|
| Q |
126 |
atg------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttg |
213 |
Q |
| |
|
|| |||||||||| | |||||| || |||||||||||||||| || || |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
19352735 |
ctgcaacgccatcaacagagaatgaaggtgatgactccataaaagaatcattgtatctaggcatgggagttggatttgcagcaggtttctgggggatttg |
19352834 |
T |
|
| Q |
214 |
tggtcctttgcttct |
228 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
19352835 |
tggttctttgtttct |
19352849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 19425933 - 19426142
Alignment:
| Q |
26 |
acacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa |
125 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| |||| |||| |||| ||| ||||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
19425933 |
acacaacttcaaagaattaatgcatcgagttacattgggaatcctaaactatgcggagctcctctcaataattgtaccatgaaagaagaaaatcctaaaa |
19426032 |
T |
|
| Q |
126 |
atg------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttg |
213 |
Q |
| |
|
|| || ||||||| |||||||| ||| | |||||||||||||| || || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19426033 |
ctgcaacaccatctacaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttg |
19426132 |
T |
|
| Q |
214 |
tggtcctttg |
223 |
Q |
| |
|
|||| ||||| |
|
|
| T |
19426133 |
tggttctttg |
19426142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 19456543 - 19456753
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||| | || |
|
|
| T |
19456543 |
caacttcaaagttttaacgcatcgagctacattggaaatccaaaattatgcggagctcctcttaataattgtaccaaggaagaagaaaatcctaagactg |
19456642 |
T |
|
| Q |
129 |
-----------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggt |
217 |
Q |
| |
|
|||||| ||| |||||||| ||| ||| ||||||| ||| || || ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19456643 |
caacccatccacagagattgaagatgatgactctataagagaatcaatgtttctcggcttgggagttggatttgcagtaggtttctgggggatttgtggt |
19456742 |
T |
|
| Q |
218 |
cctttgcttct |
228 |
Q |
| |
|
||||| |||| |
|
|
| T |
19456743 |
tctttgtttct |
19456753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 17726291 - 17726080
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||| | | |||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17726291 |
caacttcaaagttttaatgcatcgagttatattgggaatcattatctatgcggagctcctcttaataattgtaccatagaagaagaaaatcctaaaaatt |
17726192 |
T |
|
| Q |
129 |
cagag------------aatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| || ||||| |||||||| ||| | |||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17726191 |
caaagttgtctacaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtgg |
17726092 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
17726091 |
ttctttgtttct |
17726080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 19027520 - 19027309
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||| | | |||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19027520 |
caacttcaaagttttaatgcatcgagttatattgggaatcattatctatgcggagctcctcttaataattgtaccatagaagaagaaaatcctaaaaatt |
19027421 |
T |
|
| Q |
129 |
cagag------------aatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| || ||||| |||||||| ||| | |||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19027420 |
caaagttgtctacaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtgg |
19027321 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
19027320 |
ttctttgtttct |
19027309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 19335255 - 19335469
Alignment:
| Q |
26 |
acacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| |||| | || ||| ||||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
19335255 |
acacaacttcaaagttttaatgcatcgagttacattgggaatcctaaactgtgcggagctcctctcaataattgtaccatgaaagaagaaaatcctaaaa |
19335354 |
T |
|
| Q |
126 |
atg------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttg |
213 |
Q |
| |
|
|| |||| ||||| ||||| || ||| ||| |||||||||||| || || ||| |||| |||||||||| |||||||||||||||||| |
|
|
| T |
19335355 |
ctgcaatgccatcaacagataatgaagatgacgactctttaagagaatcattgtatctagggatgagagttggatttgcagcaggtttctgggggatttg |
19335454 |
T |
|
| Q |
214 |
tggtcctttgcttct |
228 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
19335455 |
tggttctttgtttct |
19335469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 18872632 - 18872421
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| |||| |||| |||| ||| |||||| |||||||||||||| |||||||||||||||||| || |
|
|
| T |
18872632 |
caacttcaaagttttaatgcatcgagttgcattgggaatcctaaactatgcggagatcctctcaataattgtaccacaaaagaagaaaatcctaaaactg |
18872533 |
T |
|
| Q |
129 |
------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| ||||||| ||| ||| ||| ||| ||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18872532 |
caaagccatctacaaagaatgaagattatgcttctataagagaatcaatgtatcttggcatgggagttggatttgcagtaggtttctgggggatttgtgg |
18872433 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
18872432 |
ttctttgtttct |
18872421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 19465598 - 19465809
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||| |||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
19465598 |
caacttcaaagttttaatgtatcaagttatattgggaatcctaaactatgcggagctcctcttaataattgtaccataacagaagaaaatcctaaaactg |
19465697 |
T |
|
| Q |
129 |
ca------------gagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||| || | | |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
19465698 |
cactgccatctacagagaatgaggatgatgaatcgataaaagaatcattgtatctaaggacgggagttggatttgcagcaggtttctgggggatttgtgg |
19465797 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
19465798 |
ttctttgtttct |
19465809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 18166402 - 18166613
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||||||||| || || |||| |||| |||| |||||||| ||||||||| |||||||||||| ||||| ||||| |||||| || |
|
|
| T |
18166402 |
caacttcaaagttttaatgcatcaagttatattgagaatcctaaactatgtggagctcctcttagtaattgtaccacaaaagaaaaaaattctaaaactg |
18166501 |
T |
|
| Q |
129 |
cag------------agaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| ||||||| |||||||| ||| ||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18166502 |
caacgccgtctacaaagaatgaagatgatgactctataagagaatggttgtacctaggcatgggagttggatttgcagtaggtttctgggggatttgtgg |
18166601 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
18166602 |
ttctttgtttct |
18166613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 25464296 - 25464505
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaa-- |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
25464296 |
caacttcaaagttttaatgcatcgagctacattggcaatccaaaattatgcggacttcctcttaaagagtgtaccacaaaagaagaaaatcctaaaaatg |
25464395 |
T |
|
| Q |
127 |
----------tgcagagaatgaggat---gatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttg |
213 |
Q |
| |
|
|||| ||| ||| ||| ||||| ||| |||||||||||||||| || || ||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
25464396 |
caacaccgtctgcaaagagtgaagataacgatgactctataaaagaatcattgtatctaggcttgggagttggatttgcaataggtttctgggggatttg |
25464495 |
T |
|
| Q |
214 |
tggtcctttg |
223 |
Q |
| |
|
|||| ||||| |
|
|
| T |
25464496 |
tggttctttg |
25464505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 18017380 - 18017480
Alignment:
| Q |
129 |
cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggtcctttgcttct |
228 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| || || |||||||| || ||||||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
18017380 |
cagagaatgaggatgatgaatctataaaagaatcattgtatctaggcatgggagttggctttgcagcaggtttctgggggatttgtggttctttgtttct |
18017479 |
T |
|
| Q |
229 |
c |
229 |
Q |
| |
|
| |
|
|
| T |
18017480 |
c |
18017480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 19376868 - 19377076
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| |||| |||| ||| |||||||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
19376868 |
caacttcaaagttttaatgcatcgagttacattgggaatcctaaactatgcggagctcctcttaataattgtaccgcagaagaagaa---tctaaaaatg |
19376964 |
T |
|
| Q |
129 |
------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| |||||||||| |||||| ||| |||||||||||| || || |||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
19376965 |
caacacaatctacaaggaatgaggatagtgaatccataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgcgg |
19377064 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
19377065 |
ttctttgtttct |
19377076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 19382139 - 19382344
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| |||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
19382139 |
caacttcaaagttttaatgcatcaagttatattgggaatcctaaactatgcggagctcctcttaataattgtaccataacagaagaaaatcctaaaactg |
19382238 |
T |
|
| Q |
129 |
------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| || ||||| || || |||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
19382239 |
cactgccatctacagagaatgaagatgatgaatctataatagagtcgttgtatctaggcatgggagttggatttggagtaggtttttgggggatttgtgg |
19382338 |
T |
|
| Q |
217 |
tccttt |
222 |
Q |
| |
|
| |||| |
|
|
| T |
19382339 |
ttcttt |
19382344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 19354961 - 19355157
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||||||||| || ||| |||| |||| |||| |||| ||| ||||||| ||||||||||||| | |||||||||||||||||| || |
|
|
| T |
19354961 |
caacttcaaagttttaatgcatcaagttacgttggaaatcctaaactatgcggagctcctctcaataattgtaccaagaaagaagaaaatcctaaaactg |
19355060 |
T |
|
| Q |
129 |
------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttg |
213 |
Q |
| |
|
|| | ||||| ||||| || ||| | |||||||||||||| || || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19355061 |
caatgccatctacaaaaaatgaagatgacgactctatcaaagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttg |
19355157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 19415430 - 19415630
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||| ||||| || |||| || |||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||| || || |
|
|
| T |
19415430 |
caacttcaaagttttaacgcatcaagttacaacgggaatcctaaactatgcggagctcctcttaataattgtaccatcaaagaagaaaatcctacaactg |
19415529 |
T |
|
| Q |
129 |
cag------------agaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| ||||||| ||| |||| ||| | ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19415530 |
caacgccatcaacaaagaatgaagattatgattctatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtgg |
19415629 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
19415630 |
t |
19415630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 16678456 - 16678664
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaa-- |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| || || |||||||| | |||||||||||||||| |
|
|
| T |
16678456 |
caacttcaaagttttaatgcatcgagctacattggcaatccaaaattatgcggagctcctctcaaaaactgtaccac---aaaagaaaatcctaaaaaca |
16678552 |
T |
|
| Q |
127 |
----------tgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
| |||| | ||| ||| |||| ||||||||||||||||||| || || ||||||| || ||||| |||||||||||||| |||||||| |
|
|
| T |
16678553 |
caacaccatctacagaaagtgaagataatgatactctaaaagaatcattgtatctgggcttgggagttggttttgcggtaggtttctggggtatttgtgg |
16678652 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
16678653 |
ttctttgtttct |
16678664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 14895144 - 14895050
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaa |
123 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| |||| |||| ||| ||||| | | ||||||||||| ||||||||||||||||| |
|
|
| T |
14895144 |
caacttcaaagttttaatgaatcgagctacattggaaatcctaaactatgcggagctcctgtaaccaattgtaccacagaagaagaaaatcctaa |
14895050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 14895004 - 14894933
Alignment:
| Q |
157 |
agaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggtcctttgcttct |
228 |
Q |
| |
|
||||||| |||| ||||| |||||| | ||||||||||||||||| |||||||||| |||| ||||| |||| |
|
|
| T |
14895004 |
agaatcaatgtatcttggcatgggaattggatttgcagtaggtttttgggggatttctggttctttgtttct |
14894933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 18017268 - 18017364
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa |
125 |
Q |
| |
|
|||||||||||| | ||||||| || || ||||| |||| |||| | || || ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18017268 |
caacttcaaagtcgtgatgcatcaagttatattgggaatcctaaactgtgcggggctcctcttaataattgtaccataacagaagaaaatcctaaaa |
18017364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 8460812 - 8461023
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||| | || ||| ||||||||| || |||||||||| |||||||||||||||||| || |
|
|
| T |
8460812 |
caacttcaaagttttaatgcatcgagctacattggaaatcctaaactgtgcggagctcctcttagtagttgtaccacgaaagaagaaaatcctaaaactg |
8460911 |
T |
|
| Q |
129 |
------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|||||||||| |||||||| ||| ||| |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
8460912 |
caatgccgtctacagagaatgaagatgatgactctataagagaatcattgtatcttggcatgggagttggatttgcagtgggtttttgggggatttgtgg |
8461011 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
8461012 |
ttctttgtttct |
8461023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 15536776 - 15536990
Alignment:
| Q |
26 |
acacaacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| |||| | |||||| ||||||| ||||||||||||| | ||||||||||||| |||| |
|
|
| T |
15536776 |
acacaacttcaaagttttaatgcatcgagttacattgagaatcctaaactgtgtggagctcctctcaataattgtaccaagaaagaagaaaatcccaaaa |
15536875 |
T |
|
| Q |
126 |
atg------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttg |
213 |
Q |
| |
|
| |||||||||| |||||||| ||| |||||||||||||| || || |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
15536876 |
ccgcaacaccatccacagagaatgaagatgatgactctaacaaagaatcattgtatctagggatgggagttggatttgcggtaggtttctgggggatttg |
15536975 |
T |
|
| Q |
214 |
tggtcctttgcttct |
228 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
15536976 |
tggttctttgtttct |
15536990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 2709327 - 2709116
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || | ||||||| ||| |||||||||| || ||||| | ||||||||||||| |||||| | |
|
|
| T |
2709327 |
caacttcagagttttaatgcttcgagctacattgggaacccacaattatgcggagctcctcttaaaaactgtactgcagaagaagaaaatcataaaaagg |
2709228 |
T |
|
| Q |
129 |
ca----------gag--aatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| ||| || || || || |||||| ||| |||||||||||| || || |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2709227 |
caatgccatctagaggaaaagaagacgacgaatctataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtgg |
2709128 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
||||||| |||| |
|
|
| T |
2709127 |
tcctttgtttct |
2709116 |
T |
|
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Target: scaffold0274 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 21832 - 22044
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa--- |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| ||||||| ||| |||||||||| || | |||||| ||||||||||||||||||| |
|
|
| T |
21832 |
caacttcaaagttttaatgcatcgagctatattgccaatccagaattatgcggaactcctcttaaaaactataccacagaagaagaaaatcctaaaactg |
21931 |
T |
|
| Q |
126 |
---------atgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| |||||||||| |||||||| ||| |||||| |||||||| ||||| ||||| || ||||||||||| |||||||||||||||| ||| |
|
|
| T |
21932 |
caaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggatttttgg |
22031 |
T |
|
| Q |
217 |
tcctttgcttctc |
229 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
22032 |
ttctttgtttctc |
22044 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 2322 - 2112
Alignment:
| Q |
29 |
caacttcaaagtttt-aatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaat |
127 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| ||||| ||||||| ||| |||||||||| || |||||||| |||||||||||||| || | |
|
|
| T |
2322 |
caacttcaaagtttttaatgcatcgagctatattgccaatccagaattatgcggaactcctcttaaaaactgtaccac---agaagaaaatcctataact |
2226 |
T |
|
| Q |
128 |
gca------------gagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtg |
215 |
Q |
| |
|
||| |||||||| |||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| | |
|
|
| T |
2225 |
gcaaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcg |
2126 |
T |
|
| Q |
216 |
gtcctttgcttctc |
229 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
2125 |
gttctttgtttctc |
2112 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 13665702 - 13665491
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaaatg |
128 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| |||| |||| | |||||| ||||||||||||||||||||| | ||||||||||||||| || || |
|
|
| T |
13665702 |
caacttcaaagttttaatgcatcaagttatattgggaatcctaaactttgtggagctcctcttaataattgtaccatgaaagaagaaaatcctagaactg |
13665603 |
T |
|
| Q |
129 |
------------cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| ||||||| ||||| || ||| |||||||||||||| ||||||| ||||| || |||||||||| ||||||||||||||| ||||| |
|
|
| T |
13665602 |
caacaccatctacaaagaatgaagatgacgactctataaaagaatcattgaaccttggcatgggggttggatttgcagcaggtttctgggggatatgtgg |
13665503 |
T |
|
| Q |
217 |
tcctttgcttct |
228 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
13665502 |
ttctttgtttct |
13665491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 2854 - 2641
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa--- |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| ||||||| ||| |||||||||| || | |||||| ||||||||||||||||||| |
|
|
| T |
2854 |
caacttcaaagttttaatgcatcgagctatattgccaatccagaattatgcggaactcctcttaaaaactataccacagaagaagaaaatcctaaaactg |
2755 |
T |
|
| Q |
126 |
---------atgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctggggg-atttgtg |
215 |
Q |
| |
|
|| |||||||||| |||||||| ||| |||||| |||||||| ||||| ||||| || ||||||||||| |||||||||||| |||| || |
|
|
| T |
2754 |
caaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggtatttttg |
2655 |
T |
|
| Q |
216 |
gtcctttgcttctc |
229 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
2654 |
gttctttgtttctc |
2641 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 11747 - 11959
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa--- |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| ||||||| || |||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
11747 |
caacttcaaagttttaatgcatcgagctatattgccaatccagaattatgcagaactcctcttaaaagctgtaccacaaaagaagaaaatcctaaaactg |
11846 |
T |
|
| Q |
126 |
---------atgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| |||||||||| |||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| || |
|
|
| T |
11847 |
caaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcgg |
11946 |
T |
|
| Q |
217 |
tcctttgcttctc |
229 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
11947 |
ttctttgtttctc |
11959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 6652 - 6861
Alignment:
| Q |
29 |
caacttcaaagttttaatgcatcgagctacattggcaatcttaaattatgtggatctcctcttaataattgtaccacggaagaagaaaatcctaaaa--- |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| ||||||| ||| |||||||||| || |||||||| |||||||||||||| || |
|
|
| T |
6652 |
caacttcaaagttttaatgcatcgagctatattgccaatccagaattatgcggaactcctcttaaaaactgtaccac---agaagaaaatcctataactg |
6748 |
T |
|
| Q |
126 |
---------atgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
216 |
Q |
| |
|
|| |||||||||| |||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| || |
|
|
| T |
6749 |
caaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcgg |
6848 |
T |
|
| Q |
217 |
tcctttgcttctc |
229 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
6849 |
ttctttgtttctc |
6861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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