View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_47 (Length: 232)
Name: NF10207_low_47
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 19397799 - 19397864
Alignment:
| Q |
45 |
attattgttttgatatatagtgaatgagttgcaatgccttgtaacatctattttaatcgtttgaat |
110 |
Q |
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| T |
19397799 |
attattgttttgatatatagtgaatgagttgcaatgccttgtaatatctattttaatcgtttgaat |
19397864 |
T |
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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 19397858 - 19397945
Alignment:
| Q |
127 |
tttgaatcacactaactttctaaaatatcataatagnnnnnnnnngtcaaatttgtataaaaataacacaacttcttgtattgaaacttct |
217 |
Q |
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| T |
19397858 |
tttgaatcacactaactttctgaaatatcataata---attttttgtcaaatttgtataaaaataacacaacttcttgtattgaaacttct |
19397945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 19373220 - 19373308
Alignment:
| Q |
126 |
atttgaatcacactaactttctaaaatatcataatagnnnnnnnnngtcaaatttgtataaaaataacacaacttcttgtattgaaacttct |
217 |
Q |
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| T |
19373220 |
attttaatcagactaactttctaaaatatcataata---attttttgtcaaatttgtatacaaataacacaacttcttgtattgaaacttct |
19373308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 19373171 - 19373228
Alignment:
| Q |
45 |
attattgttttgatatatagtgaatgagttgcaatgccttgtaacatctattttaatc |
102 |
Q |
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| T |
19373171 |
attattgttttgatatatagtgagtgagttgcaatgccatgtaatatccattttaatc |
19373228 |
T |
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