View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10207_low_51 (Length: 227)

Name: NF10207_low_51
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10207_low_51
NF10207_low_51
[»] chr6 (3 HSPs)
chr6 (1-227)||(4046870-4047096)
chr6 (130-215)||(6068970-6069055)
chr6 (130-215)||(14936487-14936572)
[»] chr2 (5 HSPs)
chr2 (130-215)||(23227302-23227387)
chr2 (148-213)||(13724134-13724199)
chr2 (151-227)||(40713978-40714054)
chr2 (115-159)||(15258791-15258835)
chr2 (147-211)||(31469095-31469159)
[»] chr4 (4 HSPs)
chr4 (126-220)||(31013032-31013126)
chr4 (112-211)||(44900077-44900176)
chr4 (115-215)||(1716301-1716399)
chr4 (113-161)||(4780379-4780427)
[»] scaffold0171 (1 HSPs)
scaffold0171 (111-227)||(12371-12487)
[»] chr7 (1 HSPs)
chr7 (115-215)||(28469481-28469581)
[»] chr3 (6 HSPs)
chr3 (115-215)||(9213516-9213616)
chr3 (129-212)||(53275309-53275392)
chr3 (147-227)||(50989505-50989586)
chr3 (147-227)||(51092637-51092718)
chr3 (115-159)||(5237540-5237584)
chr3 (112-216)||(37508918-37509022)
[»] chr5 (2 HSPs)
chr5 (111-204)||(27080981-27081074)
chr5 (113-213)||(11574112-11574212)
[»] scaffold0650 (1 HSPs)
scaffold0650 (147-210)||(20-83)
[»] scaffold0017 (1 HSPs)
scaffold0017 (122-215)||(30037-30130)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4047096 - 4046870
Alignment:
Q  1 gactggtgaaaaagttgccatatatgtcattgattgccgttggaaagagaatacacaaatggaagaaaaaggtaccatgttatttgtatgtcaacaattt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047096 gactggtgaaaaagttgccatatatctcattgattgccgttggaaagagaatacacaaatggaagaaaaaggtaccatgttatttgtatgtcaacaattt 4046997  T
Q  101 tcgagtatggtaactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatc 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||   ||||| ||  ||    
T  4046996 tcgagtatggtaactactccctctgatcttatttataaaagacgttttggtctacaaaaatcgatatatttaatccaaatttttatttaaatatattttc 4046897  T
Q  201 ttttgttgacctaaaagttccttataa 227  Q
    |||||||||| ||||| ||||||||||    
T  4046896 ttttgttgacttaaaaattccttataa 4046870  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 6069055 - 6068970
Alignment:
Q  130 tatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaa 215  Q
    |||||||||||||  ||| |||||||||||||  || |||||| || ||||| ||| |   |||| ||||||||||||||||||||    
T  6069055 tatttataaaagatatttaggtcaacaaaagttaatgtatttggtctaaatttttaactcgatacttcatcttttgttgacctaaa 6068970  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 14936572 - 14936487
Alignment:
Q  130 tatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaa 215  Q
    ||||||||| |||  ||| ||||||||| ||| ||| ||||||   |||||||||| | | |||||||| ||||||||||||||||    
T  14936572 tatttataagagatatttgggtcaacaatagttgatgtatttggaacaaattcttaactagatacatcaccttttgttgacctaaa 14936487  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 23227387 - 23227302
Alignment:
Q  130 tatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaa 215  Q
    ||||||||| |||| ||||||||||||||||| ||| |||||| ||||||||||||| || ||||||||  |||||||||||||||    
T  23227387 tatttataagagacattttggtcaacaaaagttgatgtatttggtccaaattcttagtcagatacatcacattttgttgacctaaa 23227302  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 13724199 - 13724134
Alignment:
Q  148 tggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgaccta 213  Q
    |||||||||||||| ||| ||| || ||||| || ||| |||||||||||| ||||||||||||||    
T  13724199 tggtcaacaaaagttgatgtatctggtccaattttttaaccaaatacatcaacttttgttgaccta 13724134  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 40713978 - 40714054
Alignment:
Q  151 tcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttccttataa 227  Q
    |||| |||||||||| |||||| |||| ||| | | |||||||||||| |||||||||||||| ||||  |||||||    
T  40713978 tcaataaaagtcgatgtatttggtccatattatgaaccaaatacatcaacttttgttgacctacaagtctcttataa 40714054  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 15258791 - 15258835
Alignment:
Q  115 tactccctccgatcttatttataaaagacgttttggtcaacaaaa 159  Q
    ||||| |||||||||||||||| ||||||||||  ||||||||||    
T  15258791 tactctctccgatcttatttattaaagacgtttgagtcaacaaaa 15258835  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 31469159 - 31469095
Alignment:
Q  147 ttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacc 211  Q
    ||||||||| |||||  || |||||||| |||||| ||| |||||||||| | ||||||||||||    
T  31469159 ttggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgacc 31469095  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 31013032 - 31013126
Alignment:
Q  126 atcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttc 220  Q
    |||||||||||||||||| ||| | ||||||||||| ||| |||||| |  ||||||||| | | ||||||||||||||||||||||||| ||||    
T  31013032 atcttatttataaaagacatttagatcaacaaaagtagatgtatttggtttaaattcttaactagatacatcatcttttgttgacctaaatgttc 31013126  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 44900077 - 44900176
Alignment:
Q  112 aactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacc 211  Q
    |||||||||||||| || ||||||||| |||  || |||||||||||||| ||||||| || ||||| |  ||| ||| |||| ||| ||||||||||||    
T  44900077 aactactccctccggtcctatttataagagatattctggtcaacaaaagttgatatatctggtccaattgtttaaccagatacgtcaacttttgttgacc 44900176  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 1716301 - 1716399
Alignment:
Q  115 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 214  Q
    ||||||||||| |||||||||||| |||   |||||||||||||||| ||| ||| ||||||||  | ||| ||| || ||||| |||| ||||||||||    
T  1716301 tactccctccggtcttatttataagagataatttggtcaacaaaagttgatgtatctgatccaa--ttttaaccagatgcatcaactttggttgacctaa 1716398  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 4780427 - 4780379
Alignment:
Q  113 actactccctccgatcttatttataaaagacgttttggtcaacaaaagt 161  Q
    ||||||||||||| || ||||||||| |||  |||||||||||||||||    
T  4780427 actactccctccggtcctatttataagagaaattttggtcaacaaaagt 4780379  T

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Target: scaffold0171 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 12487 - 12371
Alignment:
Q  111 taactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgac 210  Q
    |||||| |||||||| || ||||||||| |||  |||||||||| |||||| | | | |||| || ||||||||| ||| ||||||||  ||||||||||    
T  12487 taactattccctccggtcctatttataagagatattttggtcaaaaaaagttggtgtgtttggtctaaattcttaaccagatacatcacattttgttgac 12388  T
Q  211 ctaaaagttccttataa 227  Q
    || || ||| |||||||    
T  12387 ctgaatgtttcttataa 12371  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 28469481 - 28469581
Alignment:
Q  115 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 214  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||||  || |||  | |||||||| |||  || ||||||||  |||| |||||||||    
T  28469481 tactcccttcgatcttatttataaaagacatttaggtcaacaaaagttaatgtatcaggtccaaattattaatcagatacatcacattttattgacctaa 28469580  T
Q  215 a 215  Q
    |    
T  28469581 a 28469581  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 9213516 - 9213616
Alignment:
Q  115 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 214  Q
    ||||||||||| || |||||||||||||| |||| |||||||||||| ||| ||| ||  | || ||  || ||||||||||||  ||||||||||||||    
T  9213516 tactccctccggtcctatttataaaagacattttagtcaacaaaagttgatgtatctggactaattttataaccaaatacatcaatttttgttgacctaa 9213615  T
Q  215 a 215  Q
    |    
T  9213616 a 9213616  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 53275309 - 53275392
Alignment:
Q  129 ttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacct 212  Q
    ||||||||||||||  ||| ||||||||||| | ||| ||||| |||||||||||||   | ||||||||| ||||||||||||    
T  53275309 ttatttataaaagatatttgggtcaacaaaaattgatgtatttaatccaaattcttaattagatacatcatattttgttgacct 53275392  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 50989505 - 50989586
Alignment:
Q  147 ttggtcaacaaaagtcgatatatttgatccaaattcttagccaaa-tacatcatcttttgttgacctaaaagttccttataa 227  Q
    |||||||| ||||||  ||||||||  | |||||||||| ||||| ||||||||||||| ||||| ||||| || |||||||    
T  50989505 ttggtcaagaaaagttaatatatttagttcaaattcttaaccaaaatacatcatcttttattgacataaaaatttcttataa 50989586  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 51092637 - 51092718
Alignment:
Q  147 ttggtcaacaaaagtcgatatatttgatccaaattcttagccaaa-tacatcatcttttgttgacctaaaagttccttataa 227  Q
    |||||||| ||||||  ||||||||  | |||||||||| ||||| ||||||||||||| ||||| ||||| || |||||||    
T  51092637 ttggtcaagaaaagttaatatatttagttcaaattcttaaccaaaatacatcatcttttattgacataaaaatttcttataa 51092718  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 5237540 - 5237584
Alignment:
Q  115 tactccctccgatcttatttataaaagacgttttggtcaacaaaa 159  Q
    |||||| || ||||||||||||||||||||||||  |||||||||    
T  5237540 tactccttctgatcttatttataaaagacgtttttttcaacaaaa 5237584  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 37508918 - 37509022
Alignment:
Q  112 aactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacc 211  Q
    |||||||||||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| ||||||||||||    
T  37508918 aactactccctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacc 37509017  T
Q  212 taaaa 216  Q
     ||||    
T  37509018 caaaa 37509022  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 27081074 - 27080981
Alignment:
Q  111 taactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatctttt 204  Q
    |||||||||  ||||||| |||||| || |||| ||| ||||||||||||| ||| ||||| ||| ||||| |||  |||||| ||||||||||    
T  27081074 taactactctttccgatcctatttacaagagacatttaggtcaacaaaagttgatgtatttaatctaaatttttaatcaaataaatcatctttt 27080981  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 11574212 - 11574112
Alignment:
Q  113 actactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacct 212  Q
    ||||||| ||||| || ||||||||| |||| ||| ||||||||||| | || |||| || ||||| || ||| | | |||||| | |||||||||||||    
T  11574212 actactctctccggtcctatttataagagacatttaggtcaacaaaaattgaaatatctggtccaatttgttaactagatacattaacttttgttgacct 11574113  T
Q  213 a 213  Q
    |    
T  11574112 a 11574112  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 83 - 20
Alignment:
Q  147 ttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgac 210  Q
    ||||||||||||||| ||| ||||||  | ||||| ||| |||||||||||| |||||||||||    
T  83 ttggtcaacaaaagttgatgtatttggactaaatttttaaccaaatacatcaacttttgttgac 20  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 30130 - 30037
Alignment:
Q  122 tccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaa 215  Q
    ||||||| ||||||||| |||| |||   | ||||||||| ||| |||||| || ||||||||| | | |||||||||||||| ||||| ||||    
T  30130 tccgatcatatttataatagacatttaaataaacaaaagtagatgtatttggtctaaattcttaactagatacatcatcttttattgacataaa 30037  T

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