View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_55 (Length: 222)
Name: NF10207_low_55
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_55 |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 42433565 - 42433768
Alignment:
| Q |
13 |
gagaggaggtaaccttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42433565 |
gagaggaggtaaccttgaagacttgaggcctgcagatctcaacagacctgaaacttcagggagtcaaacacacaagaacaccaactcaaccgattgcaaa |
42433664 |
T |
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| Q |
113 |
gaaccctaacaaccctttcgggattaaaagaaccacaccctttcggaacaaaaagtccataactaccaccactcgaagtctctgatatgaaacacagaag |
212 |
Q |
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| T |
42433665 |
gaatcctaacaaccctttcgggtttatga-aaccaaa-----tcaccacaaaaagtccataactaccaccacccgaagtctcttatatgaaacacagaag |
42433758 |
T |
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| Q |
213 |
caaacaatac |
222 |
Q |
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|||||||||| |
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| T |
42433759 |
caaacaatac |
42433768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 557527 - 557311
Alignment:
| Q |
13 |
gagaggaggtaaccttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaa |
112 |
Q |
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||||||| |||||| ||||||||||| ||||||| ||||||||||||||| ||| |||| ||| ||| |||| | ||| || ||||||||||||||| |
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| T |
557527 |
gagaggacgtaaccctgaagacttgaagcctgcagatctcaacagacctggaacatcagagag-caagcacaagagtaca--aaatcaaccgattgcaaa |
557431 |
T |
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| Q |
113 |
gaaccctaacaaccctttcgggattaaaagaaccacaccctttcgg--------aac---aaaaagtccataactaccaccactcgaagtctctgatatg |
201 |
Q |
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| T |
557430 |
gaacccgaacaaccctttcgag-ttaaaagaaccaaaccctttcgggtttaggaaaccaaaacaaggccataacaaccaccacctgaagtctctgatcta |
557332 |
T |
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| Q |
202 |
aaacacagaagcaaacaatac |
222 |
Q |
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| T |
557331 |
aaacacagaagcaaacaatac |
557311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 9192482 - 9192530
Alignment:
| Q |
34 |
cttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaaca |
82 |
Q |
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| T |
9192482 |
cttgagacctgcaaatctcaacagacctggaacatcagagaatcaaaca |
9192530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 17303483 - 17303340
Alignment:
| Q |
6 |
agaagcagagaggaggtaaccttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccga |
105 |
Q |
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| T |
17303483 |
agaaccagagagaaggtaaccttgaagacttgaagcctgcagatctcaacagacctggaacttca-ggtttcaagcacacatgaacatcaactcaaccga |
17303385 |
T |
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| Q |
106 |
ttgcaaagaaccctaacaaccctttcgggattaaaagaaccacacc |
151 |
Q |
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| T |
17303384 |
ttgcaaagaaccctaacaactcttttggg-ttaaaaggaccacacc |
17303340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 17302957 - 17302897
Alignment:
| Q |
160 |
acaaaaagtccataactaccaccactcgaagtctctgatatgaaacacagaagcaaacaatac |
222 |
Q |
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| T |
17302957 |
acaaaaaggccataactaccaccatccaaagtctctgatctgaaacac--aagcaaacaatac |
17302897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 22065739 - 22065522
Alignment:
| Q |
13 |
gagaggaggtaaccttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaa |
112 |
Q |
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||||||| |||| | ||||||||||| ||||||| ||||||||||||||| ||| |||| ||||||| |||| || ||| || ||||| ||||||||| |
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| T |
22065739 |
gagaggacgtaatcctgaagacttgaagcctgcagatctcaacagacctggaacatcagagagtcaa--gcacaagagcacaaaatcaacggattgcaaa |
22065642 |
T |
|
| Q |
113 |
gaaccctaacaaccctttcgggattaaaagaaccacaccctttcgg--------aac---aaaaagtccataactaccaccactcgaagtctctgatatg |
201 |
Q |
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|||||| ||||||||||||||| |||||||||||| |||||||||| ||| || ||| ||||||| |||||||| ||||||||||||| || |
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| T |
22065641 |
gaacccaaacaaccctttcggg-ttaaaagaaccaaaccctttcgggtttacgaaaccaaaacaaggccataacaaccaccacccgaagtctctgatctg |
22065543 |
T |
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| Q |
202 |
aaacacagaagcaaacaatac |
222 |
Q |
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||||||| ||||||||||||| |
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| T |
22065542 |
aaacacataagcaaacaatac |
22065522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 47810628 - 47810754
Alignment:
| Q |
19 |
aggtaaccttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaagaaccc |
118 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||| ||| | | ||||||| ||||||| |||||| |||||||||| |||||||||| |
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| T |
47810628 |
aggtaaccctgaagacttgaggcctgcagatctcaacagacctggaacat--gagagtcaa--gcacatgagcaccaattcaaccgatttcaaagaaccc |
47810723 |
T |
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| Q |
119 |
taacaaccctttcgggattaaaagaaccacac |
150 |
Q |
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| T |
47810724 |
aaacaaccctttcggg-ttaaaagaaccacac |
47810754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 3925487 - 3925438
Alignment:
| Q |
13 |
gagaggaggtaaccttgaagacttgaggcctgcaaatctcaacagacctg |
62 |
Q |
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|||||||||| ||| |||||||||||| |||||| ||||||||||||||| |
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| T |
3925487 |
gagaggaggtgaccctgaagacttgagacctgcagatctcaacagacctg |
3925438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 31750182 - 31750137
Alignment:
| Q |
13 |
gagaggaggtaaccttgaagacttgaggcctgcaaatctcaacaga |
58 |
Q |
| |
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|||||||||| ||| |||||||||||| |||||| ||||||||||| |
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| T |
31750182 |
gagaggaggtgaccctgaagacttgagacctgcagatctcaacaga |
31750137 |
T |
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