View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10207_low_59 (Length: 210)

Name: NF10207_low_59
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10207_low_59
NF10207_low_59
[»] chr4 (5 HSPs)
chr4 (18-195)||(3746290-3746467)
chr4 (112-195)||(13538252-13538336)
chr4 (103-195)||(31351661-31351754)
chr4 (114-153)||(38415494-38415533)
chr4 (114-171)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (104-188)||(1028751-1028836)
chr8 (116-171)||(28300139-28300194)
chr8 (104-148)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (104-191)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (113-194)||(37307687-37307769)
chr7 (112-195)||(9667228-9667312)
chr7 (112-148)||(27227261-27227297)
chr7 (108-170)||(23982068-23982130)
chr7 (113-170)||(24250144-24250201)
chr7 (112-148)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (113-195)||(9737574-9737657)
chr3 (103-148)||(52910376-52910421)
chr3 (112-148)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (103-148)||(37123631-37123676)
chr2 (112-148)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 3746290 - 3746467
Alignment:
Q  18 atgaagtgtagctaagaggggtttgtttataagacaccaaatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagt 117  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||       |||| |||| ||||     
T  3746290 atgaagtgtagccaagaggggtttgtttataagacaacaagtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagc 3746389  T
Q  118 ggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctg 195  Q
    ||||||||| | ||||||||| | ||||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  3746390 ggctagatttacacacattatatgtggagaaatgggaaatccggggttcgaacctcacccctacacataatatctctg 3746467  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 13538252 - 13538336
Alignment:
Q  112 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 195  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 13538336  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 31351661 - 31351754
Alignment:
Q  103 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctg 195  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctg 31351754  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  114 tagtggctagattcaaacacattatgtatggagaaatgga 153  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 35010382 - 35010439
Alignment:
Q  114 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 171  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | |||||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaacc 35010439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  104 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 188  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 28300194 - 28300139
Alignment:
Q  116 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 171  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | |||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaacc 28300139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  104 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 148  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 2098864 - 2098777
Alignment:
Q  104 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatc 191  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatc 2098777  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 37307769 - 37307687
Alignment:
Q  113 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctct 194  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| |||||||||||||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctct 37307687  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 9667228 - 9667312
Alignment:
Q  112 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 195  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 9667312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 27227261 - 27227297
Alignment:
Q  112 tctagtggctagattcaaacacattatgtatggagaa 148  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaa 27227297  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 23982130 - 23982068
Alignment:
Q  108 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 170  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | ||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaac 23982068  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 24250144 - 24250201
Alignment:
Q  113 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 170  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| ||||||||||||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  112 tctagtggctagattcaaacacattatgtatggagaa 148  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 9737574 - 9737657
Alignment:
Q  113 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctg 195  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||| ||| |||||| |||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctg 9737657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  103 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 148  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  112 tctagtggctagattcaaacacattatgtatggagaa 148  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  103 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 148  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  112 tctagtggctagattcaaacacattatgtatggagaa 148  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

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