View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_6 (Length: 440)
Name: NF10207_low_6
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_6 |
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| [»] scaffold0778 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 25895870 - 25895449
Alignment:
| Q |
1 |
gaactcttctcacgaagagaaaattagcaaacaaaagagaattacgagaaacggtgattgcaaggctggtgaaaacgcaaaccctagcaccgcttcagaa |
100 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25895870 |
gaactcttctcacggggagaaaattatcaaacaaaagagaattacgagaaacggtgattgcaaggctggtgaaaacgcaaaccctagcaccgcttcagaa |
25895771 |
T |
|
| Q |
101 |
tagttatcgctaaattgcaaaacttagtttaaacgcaaaccctagcacaacattcttaattttattcaactgaaatgatgtaatacaaaatgtatgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25895770 |
tagttatcgctaaattgcaaaacttagtttaaacgcaaaccctagcacaacattcttaattttattcaactgaaatgatgtaatacaaaatgtatgatat |
25895671 |
T |
|
| Q |
201 |
atttatgtaattgtatactacatgacaagtcatatcatttgttagatggtggatcattgccgccgcgacaacggttaattttctcgcagcctcttgtata |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
25895670 |
attcatgtaattgtatactacatgacaagtcatatcatttgttagatggtggatcattgccgccgcgacaacgattaattttctcgcagcctcttgcata |
25895571 |
T |
|
| Q |
301 |
tgggttagcaggaattcgggcagcattaagttgcttccgtccaaataccattggatagccattaattgaggccttcacatcttgagtgaatgttgtgaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
25895570 |
tgggttagcaggaattcgggcagcattaagttgcttccgtccaaataccaccggatagccgttaattgaggccttcacatcttgagtgaatgttgagaaa |
25895471 |
T |
|
| Q |
401 |
atcaaaagggtactaagaaaca |
422 |
Q |
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|||||||| ||||||||||||| |
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| T |
25895470 |
atcaaaagagtactaagaaaca |
25895449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 243 - 422
Target Start/End: Complemental strand, 25910647 - 25910468
Alignment:
| Q |
243 |
tagatggtggatcattgccgccgcgacaacggttaattttctcgcagcctcttgtatatgggttagcaggaattcgggcagcattaagttgcttccgtcc |
342 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910647 |
tagatggtggattatcgccgccgcgacaacggttaattttctcgcagcctcttgtatatgggttagcaggaattcgggcagcattaagttgcttccgtcc |
25910548 |
T |
|
| Q |
343 |
aaataccattggatagccattaattgaggccttcacatcttgagtgaatgttgtgaaaatcaaaagggtactaagaaaca |
422 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
25910547 |
aaataccaccggatagccgttaattgaggccttcacatcttgagtgaatgttgagaaaattaaaagagtactaagaaaca |
25910468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 25910920 - 25910851
Alignment:
| Q |
147 |
acaacattcttaattttattcaactgaaatgatgtaatacaaaatgtatgatatatttatgtaattgtat |
216 |
Q |
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||||||||||| ||||||| || ||||||||||||||||| ||||||| ||||||| |||||||||||| |
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| T |
25910920 |
acaacattctttgttttatttaattgaaatgatgtaatacagaatgtataatatattcatgtaattgtat |
25910851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0778 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0778
Description:
Target: scaffold0778; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 243 - 350
Target Start/End: Complemental strand, 2222 - 2115
Alignment:
| Q |
243 |
tagatggtggatcattgccgccgcgacaacggttaattttctcgcagcctcttgtatatgggttagcaggaattcgggcagcattaagttgcttccgtcc |
342 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2222 |
tagatggtggattatcgccgccgcgacaacggttaattttctcgcagcctcttgtatatgggttagcaggaattcgggcagcattaagtagcttccgtcc |
2123 |
T |
|
| Q |
343 |
aaatacca |
350 |
Q |
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|||||||| |
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| T |
2122 |
aaatacca |
2115 |
T |
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