View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_7 (Length: 435)
Name: NF10207_low_7
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_7 |
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| [»] scaffold0427 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 8101266 - 8101021
Alignment:
| Q |
1 |
cgtagtttaatggaaatcaatttaattatttaaaacaagattctctactcatgtcttttgtcatacattttgttttctagctgaatacgtaaatattcca |
100 |
Q |
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| T |
8101266 |
cgtagtttaatggaaatcaatttaattatttaaaagaagattctctactcatgtcttttgtcatacattttgttttctagctgaatacgtaaatattcca |
8101167 |
T |
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| Q |
101 |
ctggttccaccatttctacaacctgacaataacaaatattacaatggagtgaattttgcatctggtggagcaggtgcacttgttgaaactttccaaggct |
200 |
Q |
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| T |
8101166 |
ctggttccaccatttctacaacctgacaataacaaatattacaatggagtgaattttgcatctggtggagcaggtgcacttgttgaaactttccaaggct |
8101067 |
T |
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| Q |
201 |
cggtatgtctatttcattcacattataattagtcctttgtttaatg |
246 |
Q |
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| T |
8101066 |
cggtatgtctatttcattcacattataattagtcctttgtttaatg |
8101021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 246 - 419
Target Start/End: Original strand, 6868 - 7041
Alignment:
| Q |
246 |
ggctcagtacagggtggaagagtttgataggtctcccaccatgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccacc |
345 |
Q |
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| T |
6868 |
ggctcagtctagggtgggagagtttgataggtctcccaccgtgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccacc |
6967 |
T |
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| Q |
346 |
aacactttatacattccctttctctctcccctagctttctctcttcttgctattgagttccttttctgtttcct |
419 |
Q |
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| T |
6968 |
atcaatttatacattccctttctctctcccctagctttctctcttcttgctactgagttcctttcctgtttcct |
7041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 7984 - 7910
Alignment:
| Q |
270 |
tgataggtctcccaccatgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccac |
344 |
Q |
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| T |
7984 |
tgataggtctcccaccgtaggtgagtttgatgtacggttagattatgatgttccacaaatgttatgatgcaccac |
7910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 256 - 419
Target Start/End: Original strand, 3385255 - 3385419
Alignment:
| Q |
256 |
agggtggaagagtttgataggtctcccaccatgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccaccaacactttat |
355 |
Q |
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| T |
3385255 |
agggtgggagagtttgataggtcttccaccatgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccaccatcaatttat |
3385354 |
T |
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| Q |
356 |
acattccctttctctct-cccctagctttctctcttcttgctattgagttccttttctgtttcct |
419 |
Q |
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| T |
3385355 |
acattccctttctctctccccctagctttctctcttcttgctactgagttcctttcctgtttcct |
3385419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 245 - 417
Target Start/End: Complemental strand, 4297100 - 4296931
Alignment:
| Q |
245 |
tggctcagtacagggtggaagagtttgataggtctcccaccatgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccac |
344 |
Q |
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| T |
4297100 |
tggctcagtctagggtgggagagtttgataggtctcccaccgtgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccac |
4297001 |
T |
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| Q |
345 |
caacactttatacattccctttctctctcccctagctttctctcttcttgctattgagttccttttctgtttc |
417 |
Q |
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| T |
4297000 |
catcaatttatacattccctctctctctcccctagctttctc---tcttgctactgagttcctttcctgtttc |
4296931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 4295970 - 4296044
Alignment:
| Q |
270 |
tgataggtctcccaccatgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccac |
344 |
Q |
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| T |
4295970 |
tgataggtctcccaccgtaggtgagtttgatgtacggttagattatgatgttccacaaatgttatgatgcaccac |
4296044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 9738702 - 9738633
Alignment:
| Q |
320 |
ttccacaaatattatgatgcaccaccaacactttatacattccctttctctctcccctagctttctctct |
389 |
Q |
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| T |
9738702 |
ttccacaaatattatgatgcaccaccaacaccttatacatgctttttttctctatcctacctttctctct |
9738633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 18972349 - 18972300
Alignment:
| Q |
246 |
ggctcagtacagggtggaagagtttgataggtctcccaccatgagcaagt |
295 |
Q |
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| T |
18972349 |
ggctcagtctagggtggaagagcttgataggtctcccaccacgaacaagt |
18972300 |
T |
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