View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_8 (Length: 433)
Name: NF10207_low_8
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 34276257 - 34276669
Alignment:
| Q |
8 |
cagcacagacgccacttggttaagtactagatttaccagcacacacaagtatcaaaatcaaaatgactgacatgagcaacaaatattgcataatgcatat |
107 |
Q |
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| T |
34276257 |
cagcacatacgccacttggttaagtactagatttaccagcacacacaagtatcaaaatcaaaatgactgacatgagcaacaaatattgcataatgcatat |
34276356 |
T |
|
| Q |
108 |
gacagaagacacacatcatgtaaaagttaaaacgggtcatgtccaaacatctgagatatctttatatatagtaaga--tttattttcttcaatactcaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
34276357 |
gacagaagacacacatcatgtaaaagttaaaacgggtcatgtccaaacatctgagatatctttatatatagtaagagatttattttcttcagtactcaag |
34276456 |
T |
|
| Q |
206 |
aataaaacgaagatcgaaatctagattctaaagaaaaagataaaggagaaaaataatcatgtgaccccaaatatccaagaagtaaactaaagcatattta |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34276457 |
aataaaacgaagatcgaaatctagattctaaagaaaaagataaaggagaaaaataatcatgtgaccccaaatatccaagaagtaaactaaagcatattta |
34276556 |
T |
|
| Q |
306 |
atgattcatgatagtacacaaaagttccaccatggtacagacatagctgatgagttacacagggtagtgtgtcttgcagtacatacaaatgcctgaccat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34276557 |
atgattcatgatagtacacaaaagttccaccatggtacagacatagctgatgagttacacagggtagtgtgtcttgcagtacatacaaatgcctgaccat |
34276656 |
T |
|
| Q |
406 |
cagggattacagt |
418 |
Q |
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| T |
34276657 |
cagggattacagt |
34276669 |
T |
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