View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10207_low_9 (Length: 421)
Name: NF10207_low_9
Description: NF10207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10207_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 39557041 - 39556649
Alignment:
| Q |
16 |
ccaataacatgttgtaataggtcagtttatgagatccaccgtcggaccaagatcatattagagattcatatatagtaataagttttaggttgtgataaaa |
115 |
Q |
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| T |
39557041 |
ccaataacatgttgtaataggtcagtttatgagatccaccgtcggaccaagatcatattagagattcatatatagtaataagttttaggttgtgataaaa |
39556942 |
T |
|
| Q |
116 |
gtaatacacaagcaagtcgatcctagctagctaacacctcatttgagtcaatatcatcttagtaggcaaagcatagtacataatgagtgataattaaaga |
215 |
Q |
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| T |
39556941 |
gtaatacacaagcaagtcgatcctagctagctaacacctcatttgagtcaatatcatcttagtaagcaaagcatagtacataatgagtgataattaaaga |
39556842 |
T |
|
| Q |
216 |
gattaaattaatcaattaccattacttgatatggaaattcaagaaaagtgcatggttgagcttgattcatcatttcccttatttgtgctcttctttttct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39556841 |
gattaaattaatcaattaccattacttgatatggaaattcaagaaaagtgcatggttgagcttgattcatcatttcccttatttgtgctcttctttttct |
39556742 |
T |
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| Q |
316 |
tcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcaaaaggattagtctctg |
408 |
Q |
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| T |
39556741 |
tcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcgaaaggattagtctctg |
39556649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 32002004 - 32002047
Alignment:
| Q |
304 |
tcttctttttcttcttgtaagggatacccctagccttagcttga |
347 |
Q |
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| T |
32002004 |
tcttctttttcttcttgtaaggaattcctctagccttagcttga |
32002047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 4863408 - 4863330
Alignment:
| Q |
304 |
tcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagc |
382 |
Q |
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||||||||||||| |||||||||| || |||||||| | |||||||||| |||| || | ||| ||||| |||||||| |
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| T |
4863408 |
tcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagc |
4863330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 403
Target Start/End: Complemental strand, 30942248 - 30942143
Alignment:
| Q |
298 |
ttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcaaaagg |
397 |
Q |
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||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||| ||||| || || ||||| | ||| || |||||||| |
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| T |
30942248 |
ttgtgcttttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaagg |
30942149 |
T |
|
| Q |
398 |
attagt |
403 |
Q |
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|||||| |
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|
| T |
30942148 |
attagt |
30942143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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