View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10208_high_1 (Length: 470)
Name: NF10208_high_1
Description: NF10208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10208_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 50 - 459
Target Start/End: Original strand, 12554707 - 12555119
Alignment:
| Q |
50 |
tgtcccgacacatgtgattacattcactttagtaattttcgttcagtgcttcatagattcaaaataagtattaaagtacctgaaataagcatcggcgtct |
149 |
Q |
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| T |
12554707 |
tgtccggacacatgtgattacattcactttagtaattttcgttcagtgcttcatagattcaaaataagtattaaagtacctgaaataagcatcggcgtct |
12554806 |
T |
|
| Q |
150 |
ctcttggaaaacttagaaatctcagaatgatccatctcatcactctgtcctaatagcaagtaacgcccatccaacgacggtgtaaacgacgacgccatcg |
249 |
Q |
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| T |
12554807 |
cttttggaaaacttagaaatctcagaatgatccatctcatcactctgtcctaatagcaagtaacgcccatccaacgacggtgtaaacgacgacgccatcg |
12554906 |
T |
|
| Q |
250 |
gtttcaacagcttcaacccgtgtcgtttcaactccaactctctatcattttcaaatccaccaaaacacacaaaatgagcttaaacaacaagaaataacat |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12554907 |
gtttcaacagcttcaacccgtgtcgtttcaactccaactctctatcattttcaaatccaccaaaacacacaaaatgagcttaaacaacaagaaataacat |
12555006 |
T |
|
| Q |
350 |
tttttattcattgattatat---aagtattgttgtattccttcttgtaatcaacaattctctcatgttatttactcaaattattatcgatgttgaagtgt |
446 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12555007 |
tttttattcgttgattatataagaagtattgttgtattccttcttgtaatcaacaattctctcatgttatttactcaaattattatcgatattgaagtgt |
12555106 |
T |
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| Q |
447 |
cgtgttcggtgtc |
459 |
Q |
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| T |
12555107 |
cgtgttcggtgtc |
12555119 |
T |
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