View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10208_high_3 (Length: 389)

Name: NF10208_high_3
Description: NF10208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10208_high_3
NF10208_high_3
[»] chr3 (15 HSPs)
chr3 (16-381)||(46853547-46853912)
chr3 (335-381)||(35264424-35264470)
chr3 (332-381)||(44958619-44958668)
chr3 (335-381)||(35058387-35058434)
chr3 (332-382)||(23187868-23187918)
chr3 (339-381)||(30301011-30301053)
chr3 (330-375)||(31708258-31708303)
chr3 (332-381)||(36302206-36302255)
chr3 (330-375)||(40147869-40147914)
chr3 (336-379)||(51285597-51285640)
chr3 (333-378)||(3845129-3845175)
chr3 (330-375)||(31492788-31492832)
chr3 (329-374)||(32523360-32523405)
chr3 (336-381)||(37335047-37335092)
chr3 (332-381)||(38332567-38332616)
[»] chr6 (15 HSPs)
chr6 (332-381)||(1485159-1485208)
chr6 (336-376)||(2234542-2234582)
chr6 (332-381)||(30926791-30926840)
chr6 (332-377)||(31305864-31305909)
chr6 (336-381)||(34027430-34027475)
chr6 (326-380)||(4910925-4910979)
chr6 (339-381)||(34898726-34898768)
chr6 (332-381)||(9505793-9505842)
chr6 (326-365)||(34910964-34911003)
chr6 (335-381)||(10874520-10874566)
chr6 (340-378)||(25388108-25388146)
chr6 (336-381)||(17225879-17225924)
chr6 (336-381)||(34620913-34620958)
chr6 (336-381)||(34748350-34748395)
chr6 (326-358)||(765422-765454)
[»] chr2 (9 HSPs)
chr2 (330-381)||(44439275-44439326)
chr2 (329-374)||(42740997-42741042)
chr2 (335-379)||(10618956-10619000)
chr2 (330-376)||(8481285-8481331)
chr2 (332-381)||(33961994-33962043)
chr2 (332-376)||(16488351-16488395)
chr2 (335-381)||(3476442-3476488)
chr2 (340-378)||(7139706-7139744)
chr2 (336-376)||(42982571-42982611)
[»] chr4 (21 HSPs)
chr4 (332-381)||(33844000-33844049)
chr4 (332-380)||(4243410-4243458)
chr4 (332-375)||(2206859-2206902)
chr4 (332-379)||(33843706-33843753)
chr4 (329-375)||(45011894-45011940)
chr4 (332-381)||(2206356-2206405)
chr4 (332-373)||(2635186-2635227)
chr4 (335-379)||(7066596-7066640)
chr4 (335-379)||(17714694-17714738)
chr4 (336-379)||(10185221-10185264)
chr4 (330-381)||(32818383-32818434)
chr4 (329-375)||(8604641-8604687)
chr4 (336-386)||(37439172-37439222)
chr4 (338-379)||(18597069-18597110)
chr4 (338-375)||(35065092-35065129)
chr4 (336-381)||(55927783-55927828)
chr4 (330-374)||(9064252-9064296)
chr4 (329-381)||(21691225-21691277)
chr4 (336-380)||(22250253-22250297)
chr4 (339-379)||(41751287-41751327)
chr4 (339-379)||(47596316-47596356)
[»] chr1 (16 HSPs)
chr1 (329-381)||(28287349-28287401)
chr1 (330-381)||(17284117-17284168)
chr1 (336-379)||(10324953-10324996)
chr1 (336-381)||(20026177-20026222)
chr1 (336-381)||(47892401-47892446)
chr1 (337-381)||(213550-213594)
chr1 (329-381)||(7524133-7524185)
chr1 (329-381)||(11049270-11049322)
chr1 (332-381)||(24587933-24587984)
chr1 (332-380)||(39395911-39395959)
chr1 (326-381)||(7790655-7790710)
chr1 (332-374)||(4458599-4458641)
chr1 (342-380)||(52013492-52013530)
chr1 (332-373)||(29759635-29759676)
chr1 (329-381)||(1514363-1514415)
chr1 (329-365)||(51500863-51500899)
[»] chr7 (5 HSPs)
chr7 (332-381)||(27571885-27571934)
chr7 (336-379)||(30182311-30182354)
chr7 (336-374)||(40796009-40796047)
chr7 (344-377)||(38123683-38123716)
chr7 (336-372)||(12306748-12306784)
[»] chr8 (8 HSPs)
chr8 (330-381)||(13384667-13384718)
chr8 (329-381)||(26100159-26100211)
chr8 (334-381)||(13418832-13418879)
chr8 (335-369)||(3478728-3478762)
chr8 (335-381)||(4336638-4336684)
chr8 (329-381)||(4662916-4662968)
chr8 (329-381)||(32927912-32927964)
chr8 (329-381)||(35495010-35495062)
[»] scaffold0361 (1 HSPs)
scaffold0361 (336-381)||(14127-14172)
[»] chr5 (6 HSPs)
chr5 (338-379)||(24306111-24306152)
chr5 (338-379)||(24367164-24367205)
chr5 (329-381)||(42858128-42858180)
chr5 (326-360)||(9818751-9818785)
chr5 (330-375)||(2937601-2937646)
chr5 (326-375)||(18851101-18851150)


Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 46853912 - 46853547
Alignment:
Q  16 ttagatacaagaggtcactaagagtttaaatttatgaatgaaatttaacaacccctaactaaatgatactcccaactttcttagataccatgtcttgtat 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46853912 ttagatacaagaggtcacaaagagtttaaatttatgaatgaaatttaacaacccctaactaaatgatactcccaactttcttagataccatgtcttgtat 46853813  T
Q  116 atttatcttgaatattgttatacttctatcattctttctcaatataaagttctgaaatcaaaatcatatttcacgaaggaagcaacatggaatttgagtg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46853812 atttatcttgaatattgttatacttctatcattctttctcaatataaagttctgaaatcaaaatcatatgtcacgaaggaagcaacatggaatttgagtg 46853713  T
Q  216 cttgtcgacatttttactgccctcaaatttagtggtgatttaagtgattagcgtcatgttttgaggtagatacactcatatgttagagctggtatgtgat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46853712 cttgtcgacatttttactgccctcaaatttagtggtgatttaagtgattagcgtcatgttttgaggtagatacactcatatgttagagctggtatgtgat 46853613  T
Q  316 aaacattgaatatgatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46853612 aaacattgaatatgattcggagcttttgattctagaattgattttaacactcaaatttattgttca 46853547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 35264470 - 35264424
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  35264470 gagcttttgattctagaattgattttaacacttaaatttattgttca 35264424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 44958668 - 44958619
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  44958668 ttggagcttttgattctagaaatgattttaacactcaactttattgttca 44958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 35058387 - 35058434
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaaat-ttattgttca 381  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35058387 gagcttttgattctagaattgattttaacactcaaatattattgttca 35058434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 23187868 - 23187918
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttcat 382  Q
    ||||||||||| ||||||||||||| ||| |||||||||||| ||||||||    
T  23187868 ttggagcttttaattctagaattgaattttacactcaaatttgttgttcat 23187918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 30301053 - 30301011
Alignment:
Q  339 ttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||| |||||||||||| |||||||||||||||||||||||||    
T  30301053 ttttaattctagaattggttttaacactcaaatttattgttca 30301011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 31708303 - 31708258
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttat 375  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttat 31708258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 36302206 - 36302255
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| |||||||| |||||||||||||| |||| ||||||||||||||    
T  36302206 ttggagattttgattttagaattgattttagcacttaaatttattgttca 36302255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 40147914 - 40147869
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttat 375  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||    
T  40147914 atttggagcttttgattctagaattgatttcaacacttgaatttat 40147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 51285597 - 51285640
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||||||||||||||||||||  ||||||||||| |||||    
T  51285597 agcttttgattctagaattgatttttgcactcaaatttgttgtt 51285640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 3845175 - 3845129
Alignment:
Q  333 tggagcttttgattctagaattga-ttttaacactcaaatttattgt 378  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||    
T  3845175 tggagcttttgattctagaattgattttttacactaaaatttattgt 3845129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 31492788 - 31492832
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttat 375  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||    
T  31492788 atttgtagcttttgattctagaattga-tttaacacacaaatttat 31492832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 32523405 - 32523360
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaattta 374  Q
    |||||| |||||||||||||| |||||||||| |||| ||||||||    
T  32523405 gatttgtagcttttgattctaaaattgatttttacacacaaattta 32523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 37335092 - 37335047
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||||||||||| |||||  |||| ||||||||    
T  37335092 agcttttgattctagaattgatttttacacttgaattcattgttca 37335047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 38332616 - 38332567
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||| |||||||| ||||| | || ||||||||||||||||||||    
T  38332616 ttggagcttctgattctaaaattggtatttacactcaaatttattgttca 38332567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 1485208 - 1485159
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1485208 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 1485159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 2234542 - 2234582
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttatt 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2234542 agcttttgattctagaattgattttaacactcaaatttatt 2234582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 30926840 - 30926791
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  30926840 ttggagttttttattctagaattgatttttacactcaaatttattgttca 30926791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 31305909 - 31305864
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattg 377  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||    
T  31305909 ttggagcttttgattctagaattgatttatacactcaaatttattg 31305864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 34027475 - 34027430
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  34027475 agcttttgattctagaattgatttttacactcaaatttattattca 34027430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 4910925 - 4910979
Alignment:
Q  326 tatgatttggagcttttgattctagaattgattttaacactcaaatttattgttc 380  Q
    ||||||||| ||||||||||||||||||||||||| |||  ||||||||| ||||    
T  4910925 tatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttc 4910979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 34898726 - 34898768
Alignment:
Q  339 ttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  34898726 tttttattctagaattgattttaacactcgaatttattgttca 34898768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 9505793 - 9505842
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||||  ||||||||| | ||||||||||||||||||    
T  9505793 ttggagcttttgattctatgattgatttttaaactcaaatttattgttca 9505842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 34910964 - 34911003
Alignment:
Q  326 tatgatttggagcttttgattctagaattgattttaacac 365  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  34910964 tatgatttgtagcttttgattctagaattgattttgacac 34911003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 10874520 - 10874566
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||||||||||||||| ||| ||||| ||| ||||||    
T  10874520 gagcttttgattctagaattgatttttacattcaaacttagtgttca 10874566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 25388108 - 25388146
Alignment:
Q  340 tttgattctagaattgattttaacactcaaatttattgt 378  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  25388108 tttgattttagaattgattttgacactcaaatttattgt 25388146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 17225879 - 17225924
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||||||||||| |||  ||||||||| |||||    
T  17225879 agcttttgattctagaattgatttttacatacaaatttatagttca 17225924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 34620913 - 34620958
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||| ||||||||||||||||||| ||||| ||||||||| ||||    
T  34620913 agcttctgattctagaattgatttttacactaaaatttatttttca 34620958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 34748350 - 34748395
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||| ||||||||||||||||||| ||||| ||||||||| ||||    
T  34748350 agcttctgattctagaattgatttttacactaaaatttatttttca 34748395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 765454 - 765422
Alignment:
Q  326 tatgatttggagcttttgattctagaattgatt 358  Q
    ||||||||| |||||||||||||||||||||||    
T  765454 tatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 44439275 - 44439326
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44439275 atttggagcttttgattctaaaattgattttaacactcaaatttattgttca 44439326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 42740997 - 42741042
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaattta 374  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  42740997 gatttgtagcttttgattctagaattgatttttacactcaaattta 42741042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 10619000 - 10618956
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||    
T  10619000 gagcttttgattctataattgattttaacactcaaatttgttgtt 10618956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 8481331 - 8481285
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttatt 376  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||    
T  8481331 atttggagcttttgattcaagaattgatttttagactcaaatttatt 8481285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 33962043 - 33961994
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| ||||||||||| |||||||||| | ||||||||||||||||||    
T  33962043 ttggagtttttgattctataattgatttttagactcaaatttattgttca 33961994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 16488351 - 16488395
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttatt 376  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||    
T  16488351 ttggagctgttgattctagaattgattataacaatcaaatttatt 16488395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 3476488 - 3476442
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||||||||| ||||| ||| |||||| |||||||||    
T  3476488 gagcttttgattctagaatttatttttacattcaaatgtattgttca 3476442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 7139706 - 7139744
Alignment:
Q  340 tttgattctagaattgattttaacactcaaatttattgt 378  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  7139706 tttgattctagaattgatttttacaatcaaatttattgt 7139744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 42982571 - 42982611
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttatt 376  Q
    |||||||||||| |||||||||||| |||| ||||||||||    
T  42982571 agcttttgattccagaattgatttttacacacaaatttatt 42982611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 33844000 - 33844049
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33844000 ttggagcttttgattctaaaattgattttaacactcaaatttattgttca 33844049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 4243410 - 4243458
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttc 380  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4243410 ttggagcttttgattctagaattgatttttacactcaaatttattgttc 4243458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 2206859 - 2206902
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttat 375  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||    
T  2206859 ttggagcttttgattttagaattgactttaacactcaaatttat 2206902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 33843706 - 33843753
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||    
T  33843706 ttggagctttttatcctaaaattgattttaacactcaaatttattgtt 33843753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 45011894 - 45011940
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttat 375  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||    
T  45011894 gatttgtagcttttgattctagaattgattttcacacacaaatttat 45011940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 2206405 - 2206356
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||||| |||||||||  ||||||||||||| |||||    
T  2206405 ttggagcttttgattctaggattgatttttgcactcaaatttatcgttca 2206356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 2635186 - 2635227
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaattt 373  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  2635186 ttggagcttttgagtctagaattgattttaagactcaaattt 2635227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 7066640 - 7066596
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||    
T  7066640 gagcttttgattctacaatggattttcacactcaaatttattgtt 7066596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 17714694 - 17714738
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||||||| |||||||||||||  |||||||||||||||||    
T  17714694 gagcttttgattatagaattgatttttgcactcaaatttattgtt 17714738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 10185221 - 10185264
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||||||||| ||||||| || ||||||||||||||||||    
T  10185221 agcttttgattctaaaattgatctttacactcaaatttattgtt 10185264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 32818434 - 32818383
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||| |||||||||||||||||||||||||  ||| ||||||||| |||||    
T  32818434 atttgtagcttttgattctagaattgatttttgcacacaaatttatagttca 32818383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 8604687 - 8604641
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttat 375  Q
    |||||| |||||| |||||||||||||||||| |||| |||||||||    
T  8604687 gatttgtagctttcgattctagaattgattttcacacacaaatttat 8604641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 37439172 - 37439222
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttcatctct 386  Q
    ||||||| |||||| |||||||||| |||||||| ||||||||||| ||||    
T  37439172 agcttttaattctataattgatttttacactcaattttattgttcaactct 37439222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 18597069 - 18597110
Alignment:
Q  338 cttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||||||| |||||||||||||| ||||| ||||||||    
T  18597069 cttttgattctataattgattttaacattcaaagttattgtt 18597110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 35065092 - 35065129
Alignment:
Q  338 cttttgattctagaattgattttaacactcaaatttat 375  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  35065092 cttttgattctagaattgatttttacacacaaatttat 35065129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 55927828 - 55927783
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||| ||||||||||||||||  | ||||||||||||||||||||    
T  55927828 agcttctgattctagaattgatcgtcacactcaaatttattgttca 55927783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 9064252 - 9064296
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaattta 374  Q
    ||||| || |||||||||||||||||||||| |||||||| ||||    
T  9064252 atttgtagtttttgattctagaattgattttcacactcaagttta 9064296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 21691277 - 21691225
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| |||||||| || ||||||||||||| |||| ||||||||| |||||    
T  21691277 gatttgtagcttttggttgtagaattgattttcacacacaaatttatagttca 21691225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 22250253 - 22250297
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttc 380  Q
    |||||||||||||  ||||| |||||| |||||||||||||||||    
T  22250253 agcttttgattctgaaattgcttttaatactcaaatttattgttc 22250297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 41751327 - 41751287
Alignment:
Q  339 ttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||||||||||||||||| | ||| ||||||||||||    
T  41751327 ttttgattctagaattgatttttaaacttaaatttattgtt 41751287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 47596356 - 47596316
Alignment:
Q  339 ttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||| || |||||||||| ||||||||||||||||||    
T  47596356 ttttgattataaaattgatttttacactcaaatttattgtt 47596316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 28287401 - 28287349
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  28287401 gatttgtagcttttgattttagaattgattttaacactcaaatttattgttca 28287349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 17284117 - 17284168
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  17284117 atttggaacttttgattctaaaattgatttttacactcaaatttattgttca 17284168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 10324996 - 10324953
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  10324996 agcttttgattctataattgatttttacactcaaatttattgtt 10324953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 20026222 - 20026177
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||    
T  20026222 agcttttaactctagaattgatttgaacactcaaatttattgttca 20026177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 47892446 - 47892401
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||    
T  47892446 agcttttgattctagaattgattttaacactaaaacatattgttca 47892401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 213594 - 213550
Alignment:
Q  337 gcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||||||||||||| | |||||||||| |||||||    
T  213594 gcttttgattctagaattgatttttaaactcaaatttgttgttca 213550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 7524133 - 7524185
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| ||||||||||| ||||||||||||| |||| ||||||||| |||||    
T  7524133 gatttgtagcttttgattatagaattgatttttacacacaaatttatagttca 7524185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 11049270 - 11049322
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| |||||||||||||| |||||||||| |||| ||||||||| |||||    
T  11049270 gatttgtagcttttgattctaaaattgatttttacacacaaatttatagttca 11049322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 24587933 - 24587984
Alignment:
Q  332 ttggagcttttgattct--agaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||||||  | |||||||||||||||||||||||||| ||||    
T  24587933 ttggagcttttgattctctataattgattttaacactcaaatttattattca 24587984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 39395911 - 39395959
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttc 380  Q
    |||||| |||| ||||||||||| ||||| |||||||||||||||||||    
T  39395911 ttggagttttttattctagaattaatttttacactcaaatttattgttc 39395959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 7790710 - 7790655
Alignment:
Q  326 tatgatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||||||| || ||| ||||||| |||||||||| |||| |||||||||||||||    
T  7790710 tatgatttgtagatttagattctataattgatttttacacacaaatttattgttca 7790655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 4458599 - 4458641
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaattta 374  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||    
T  4458599 ttggagcttttgattctagtattgaatttaaaactcaaattta 4458641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 52013530 - 52013492
Alignment:
Q  342 tgattctagaattgattttaacactcaaatttattgttc 380  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  52013530 tgattctagaattgatttttacactcaaatttactgttc 52013492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 29759635 - 29759676
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaattt 373  Q
    ||||||||| |||||||| |||||||||| ||||||||||||    
T  29759635 ttggagcttctgattctataattgatttttacactcaaattt 29759676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 1514363 - 1514415
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| ||||||| ||| || |||||||||| |||| |||||||||||||||    
T  1514363 gatttgtagctttttattatataattgatttttacacacaaatttattgttca 1514415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 51500899 - 51500863
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacac 365  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  51500899 gatttgtagcttttgattctagaattgatttttacac 51500863  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 27571885 - 27571934
Alignment:
Q  332 ttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  27571885 ttggagcttttgattctagaattgattttaacactcaagtttattattca 27571934  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 30182354 - 30182311
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  30182354 agcttttgattctagaattaatttttacactcaaatttattgtt 30182311  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 40796047 - 40796009
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaattta 374  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  40796047 agctttcgattgtagaattgattttaacactcaaattta 40796009  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 38123716 - 38123683
Alignment:
Q  344 attctagaattgattttaacactcaaatttattg 377  Q
    ||||||||||||||||| ||||||||||||||||    
T  38123716 attctagaattgatttttacactcaaatttattg 38123683  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 12306748 - 12306784
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatt 372  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  12306748 agcttttgattttagaattgatttttacactcaaatt 12306784  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 13384718 - 13384667
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||| |||||    
T  13384718 atttgtagcttttgattctagaattgattttcacacacaaatttatagttca 13384667  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 26100211 - 26100159
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| |||||||||||||| |||||||||| |||| ||||||||| |||||    
T  26100211 gatttgtagcttttgattctataattgatttttacacacaaatttatggttca 26100159  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 13418879 - 13418832
Alignment:
Q  334 ggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||| | |||||||||||||| |||||||||| |||||    
T  13418879 ggagcttttgattccataattgattttaacattcaaatttatcgttca 13418832  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 3478762 - 3478728
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaa 369  Q
    ||||||||||||||| |||||||||||||||||||    
T  3478762 gagcttttgattctaaaattgattttaacactcaa 3478728  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 4336684 - 4336638
Alignment:
Q  335 gagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  4336684 gagctttttattttagaattaatttttacactcaaatttattgttca 4336638  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 4662968 - 4662916
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| |||||||| |||||||||||||||| |||| ||||| ||| |||||    
T  4662968 gatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttca 4662916  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 32927912 - 32927964
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| ||||||||||| ||||||| ||||| |||| ||||||||| |||||    
T  32927912 gatttgtagcttttgattatagaattcatttttacacacaaatttatagttca 32927964  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 35495010 - 35495062
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||| |||||||||||||||||||| |||| |||| ||||| ||| |||||    
T  35495010 gatttgtagcttttgattctagaattgttttttacacacaaatctatagttca 35495062  T

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Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 14172 - 14127
Alignment:
Q  336 agcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  14172 agcttatgattctagaattgatttttacactcaaatttatttttca 14127  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 24306152 - 24306111
Alignment:
Q  338 cttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  24306152 cttttgattctataattgatttttacactcaaatttattgtt 24306111  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 24367164 - 24367205
Alignment:
Q  338 cttttgattctagaattgattttaacactcaaatttattgtt 379  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  24367164 cttttgattctataattgatttttacactcaaatttattgtt 24367205  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 42858128 - 42858180
Alignment:
Q  329 gatttggagcttttgattctagaattgattttaacactcaaatttattgttca 381  Q
    |||||||||||||| |||||| |||||||||| |||| ||||||||| |||||    
T  42858128 gatttggagcttttaattctataattgattttcacacacaaatttatagttca 42858180  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 9818751 - 9818785
Alignment:
Q  326 tatgatttggagcttttgattctagaattgatttt 360  Q
    ||||||||| |||||||||||||||||||||||||    
T  9818751 tatgatttgtagcttttgattctagaattgatttt 9818785  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 2937646 - 2937601
Alignment:
Q  330 atttggagcttttgattctagaattgattttaacactcaaatttat 375  Q
    ||||| ||| ||||||||||||||||||| |||||| |||||||||    
T  2937646 atttgtagcctttgattctagaattgattataacacacaaatttat 2937601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 18851150 - 18851101
Alignment:
Q  326 tatgatttggagcttttgattctagaattgattttaacactcaaatttat 375  Q
    ||||||||| ||||||||||| ||||||||||||| |||| || ||||||    
T  18851150 tatgatttgtagcttttgattatagaattgattttcacacacatatttat 18851101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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