View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10208_high_4 (Length: 335)
Name: NF10208_high_4
Description: NF10208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10208_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 319
Target Start/End: Original strand, 38150215 - 38150528
Alignment:
| Q |
6 |
gagagaagaatatggcaaaacatatgagctggatgaggaaattttactcctatatgactccttatgcatcaaaaaatccaagggaaaactatgtgaatta |
105 |
Q |
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| T |
38150215 |
gagaaaagaatatggcaaaacatatgagctggatgaggaaattttactcctatatgactccttatgcatcaaaaaatccaagggaaaactatgtgaatta |
38150314 |
T |
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| Q |
106 |
tagagatttggatatagggatgaacaagaagaattgtacaagtctttctcttgctaactcttggggttataggtattttaagggtaacttcaataggtta |
205 |
Q |
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| T |
38150315 |
tagagatttggatatagggatgaacaagaagaattgtacaagtctttctcttgctaactcttggggttataggtattttaagggtaacttcaataggtta |
38150414 |
T |
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| Q |
206 |
gtaaaggtgaaaactaaagttgatccatctaatttctttaggcatgagcaaagtatccctccacttccaattggtaagtaagaaagtgtagaaggcaaga |
305 |
Q |
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| T |
38150415 |
gtaaaggtgaaaactaaagttgatccatctaatttctttaggcatgagcaaagtatcccttcacttccaattggtaagtaagaaagtgtagaaggcaaga |
38150514 |
T |
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| Q |
306 |
agaagagaaaatca |
319 |
Q |
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| T |
38150515 |
agaagagaaaatca |
38150528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 38161261 - 38161400
Alignment:
| Q |
169 |
gggttataggtattttaagggtaacttcaataggttagtaaaggtgaaaactaaagttgatccatctaatttctttaggcatgagcaaagtatccctcca |
268 |
Q |
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| T |
38161261 |
gggtgatagctattttaagggtaatttcaacaggatagtaaaggtgaaaattaaagttgctccgtccaatttctttaggcatgagcagagcatccctcca |
38161360 |
T |
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| Q |
269 |
cttccaattggtaagtaagaaagtgtagaaggcaagaaga |
308 |
Q |
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| T |
38161361 |
ttgccaactggtaagtaagaaagtgtataagacaagaaga |
38161400 |
T |
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