View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10208_low_3 (Length: 404)
Name: NF10208_low_3
Description: NF10208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10208_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 50713194 - 50713599
Alignment:
| Q |
1 |
tcaaactttggatgttcaaaaaccatttatcttgaataaattatctacaatcaattggttgttacttggtatgtattttgactgtttattttttccaatt |
100 |
Q |
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| T |
50713194 |
tcaaactttggatgttcaaaaaccatttatcttgaataaattatctacaatcaattggttgttacttggtatgtattttgactgttcattttttccaatt |
50713293 |
T |
|
| Q |
101 |
aggtatttttgtggcattggctttgcggtttgatgtgtctagaggaagacagccccagtatttcaagagtgcatttttaggatacacatttggcttggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50713294 |
aggtatttttgtggcattggctttgcggtttgatgtgtctagaggaagaaagccccagtatttcaagagtgcatttttaggatacacgtttggcttggtt |
50713393 |
T |
|
| Q |
201 |
cttacaattgttgtgatgaactggtttcaggctgcacaggtgattcatgtggtttca-------------ttttaatttttcgtttgggggaatgttgtg |
287 |
Q |
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| T |
50713394 |
cttacaattgttgtgatgaactggtttcaggctgcacaggtgattcatgtggtttcattttaatttttttttttaatttttcgtttgggggaatgttgtg |
50713493 |
T |
|
| Q |
288 |
aggattgtggtcattgtggccaactcaaattcactgctcgtacacgagtagctgaggttggtgatctgccttatctattaacgtttttcccgttttattg |
387 |
Q |
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| T |
50713494 |
aggattgcggtcattgtggccaactcaaattcactgctcgtacacgagtagctgaggttggtgatctgccttatctattaacgtttttcccgttttattg |
50713593 |
T |
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| Q |
388 |
atgtcc |
393 |
Q |
| |
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||||| |
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| T |
50713594 |
ttgtcc |
50713599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 50799654 - 50799248
Alignment:
| Q |
1 |
tcaaactttggatgttcaaaaaccatttatcttgaataaattatctacaatcaattggttgttacttggtatgtattttgactgtttattttttccaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50799654 |
tcaaactttggatgttcaaaaaccatttatcttgaataaattatctacaatcaattggttgttacttggtatgtattttgactgttcattttttccaatt |
50799555 |
T |
|
| Q |
101 |
aggtatttttgtggcattggctttgcggtttgatgtgtctagaggaagacagccccagtatttcaagagtgcatttttaggatacacatttggcttggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50799554 |
aggtatttttgtggcattggctttgcggtttgatgtgtctagaggaagaaagccccagtatttcaagagtgcatttttaggatacacgtttggcttggtt |
50799455 |
T |
|
| Q |
201 |
cttacaattgttgtgatgaactggtttcaggctgcacaggtgattcatgtggtttca--------------ttttaatttttcgtttgggggaatgttgt |
286 |
Q |
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| T |
50799454 |
cttacaattgttgtgatgaactggtttcaggctgcacaggtgattcatgtggtttcatttttaatttttttttttaatttttcgtttgggggaatgttgt |
50799355 |
T |
|
| Q |
287 |
gaggattgtggtcattgtggccaactcaaattcactgctcgtacacgagtagctgaggttggtgatctgccttatctattaacgtttttcccgttttatt |
386 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50799354 |
gaggattgcggtcattgtggccaactcaaattcactgctcgtacacgagtagctgaggttggtgatctgccttatctattaacgtttttcccgttttatt |
50799255 |
T |
|
| Q |
387 |
gatgtcc |
393 |
Q |
| |
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| ||||| |
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| T |
50799254 |
gttgtcc |
50799248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 838168 - 838035
Alignment:
| Q |
108 |
tttgtggcattggctttgcggtttgatgtgtctagaggaagacagccccagtatttcaagagtgcatttttaggatacacatttggcttggttcttacaa |
207 |
Q |
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||||| ||||| || ||||| |||||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||| || ||| | | || |||| |
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| T |
838168 |
tttgtagcattagccttgcgttttgatgtttctagaggaaagcaaccccaatattttaagagtgcatttttaggatacactttcggcattggcctcacaa |
838069 |
T |
|
| Q |
208 |
ttgttgtgatgaactggtttcaggctgcacaggt |
241 |
Q |
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| T |
838068 |
tatttgtgatgaactggtttcaagctgcccaggt |
838035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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