View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10208_low_5 (Length: 367)
Name: NF10208_low_5
Description: NF10208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10208_low_5 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 29820262 - 29819912
Alignment:
| Q |
1 |
actattgctagagcggtctatgaagcaatccgatgtgaatttcaacttacttgctttctagaaaatgttagagagatatctgagacaaatggtttagttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29820262 |
actattgctagagcggtctatgaagcaatccgatgtgaatttcaacttacttgctttctagaaaatgttagagagatatctgagacaaatggtttagttc |
29820163 |
T |
|
| Q |
101 |
acttacaaagacaacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaactctttccgtagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
29820162 |
acttacaaagacaacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcaaaaaaacaatacaaaactctttccgtaggaa |
29820063 |
T |
|
| Q |
201 |
aaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29820062 |
aaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataatc |
29819963 |
T |
|
| Q |
301 |
acaacgagagataaacacttgttaatgacacatggagtacataaaacttat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29819962 |
acaacgagagataaacacttgttaatgacacatggagtacataaaacttat |
29819912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 29571770 - 29572116
Alignment:
| Q |
1 |
actattgctagagcggtctatgaagcaatccgatgtgaatttcaacttacttgctttctagaaaatgttagagagatatctgagacaaatggtttagttc |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29571770 |
actattgctagagcggtctatgaaacaatccgatgtgaatttgaacttacttgctttctagaaaatgttagagagatatctgagacaaatggtttagttc |
29571869 |
T |
|
| Q |
101 |
acttacaaagacaacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaactctttccgtagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||| |
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|
| T |
29571870 |
acttacaaagacaacttctttctcatctgagtataagtaggaatgattttcatgatttgtatgatgggaaaaaaacaatacaaaactctttatgcagaaa |
29571969 |
T |
|
| Q |
201 |
aaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataatc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
29571970 |
aaaggttctacttgttcttgatgatgtgaatgaactaaaccagttggagaatttggttgggaaacaagattggtttggtccgggaagtagagtaataatc |
29572069 |
T |
|
| Q |
301 |
acaacgagagataaacacttgttaatgacacatggagtacataaaac |
347 |
Q |
| |
|
||||| ||||| || |||||| ||||||||||||||||||||||||| |
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|
| T |
29572070 |
acaacaagagacaagcacttgctaatgacacatggagtacataaaac |
29572116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 29828505 - 29828155
Alignment:
| Q |
1 |
actattgctagagcggtctatgaagcaatccgatgtgaatttcaacttacttgctttctagaaaatgttagagagatatctgagacaaatggtttagttc |
100 |
Q |
| |
|
|||||||||||||| || || |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
29828505 |
actattgctagagctgtttacgaagcaatccaatgtgaatttcaaactacttgctttcttgaaaatgttagagagatatctgaggcaaatggtttagttc |
29828406 |
T |
|
| Q |
101 |
acttacaaagacaacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaactctttccgtagaaa |
200 |
Q |
| |
|
|| ||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| | ||||| |
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| T |
29828405 |
acatacaaaggcaacttctttctcatctaagtataagtagaaatgattttcataatttgtatgatggcaaaaaaacaatacaaaattctttatgcagaaa |
29828306 |
T |
|
| Q |
201 |
aaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
29828305 |
aaaggttctacttgttcttgatgatgtgaatgaaataaatcagttggagaatttggctgggaagcaagattggtttggtccaggaagtagagtaataatc |
29828206 |
T |
|
| Q |
301 |
acaacgagagataaacacttgttaatgacacatggagtacataaaacttat |
351 |
Q |
| |
|
||||| ||||||||||||| ||| || ||||||||||||||| || ||||| |
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| T |
29828205 |
acaacaagagataaacactggttgataacacatggagtacatcaaccttat |
29828155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 199 - 351
Target Start/End: Complemental strand, 11124282 - 11124130
Alignment:
| Q |
199 |
aaaaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataa |
298 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||| | |||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
11124282 |
aaaaaggttcttcttgttcttgatgatgtgagcgaattaagccaattggagaatttagctgggaagcaagaatggtttggtccaggaagtagagttataa |
11124183 |
T |
|
| Q |
299 |
tcacaacgagagataaacacttgttaatgacacatggagtacataaaacttat |
351 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||| ||| |||||||| |
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| T |
11124182 |
tcacaagtagagataagcacttgttaatgacacatggagtgcatgaaacttat |
11124130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 20885 - 20990
Alignment:
| Q |
112 |
caacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggc-nnnnnnncaatacaaaactctttccgtagaaaaaaggttcta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
20885 |
caacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcaaaaaaaacaatacaaaactctttccgtagaaaaaaggttcta |
20984 |
T |
|
| Q |
211 |
cttgtt |
216 |
Q |
| |
|
|||||| |
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|
| T |
20985 |
cttgtt |
20990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 6589865 - 6589823
Alignment:
| Q |
271 |
tggtttggtccgggaagtagagtaataatcacaacgagagata |
313 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| ||||||| |
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|
| T |
6589865 |
tggtttggtccggggagtagaataataatcacaacaagagata |
6589823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 6713950 - 6713992
Alignment:
| Q |
271 |
tggtttggtccgggaagtagagtaataatcacaacgagagata |
313 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
6713950 |
tggtttggtccggggagtagagtaatcatcacaacaagagata |
6713992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 8412959 - 8412999
Alignment:
| Q |
271 |
tggtttggtccgggaagtagagtaataatcacaacgagaga |
311 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
8412959 |
tggtttggtccgggaagtagaataatcatcacaacaagaga |
8412999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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