View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10209_low_1 (Length: 965)
Name: NF10209_low_1
Description: NF10209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10209_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 176 - 663
Target Start/End: Original strand, 5149953 - 5150443
Alignment:
| Q |
176 |
tagcacaacctataattaggaaatccagtcttattccttacaaattcaacattgacctaaggaggaacattgttgaaccaagaataagaag---aagtta |
272 |
Q |
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| T |
5149953 |
tagcaaaacctaaaattaggaaaacctgtcttattctttacaaattcaacattaacctgagaaggtacattgttgaaccaagaataagaaggcaaggtta |
5150052 |
T |
|
| Q |
273 |
agcctagattagctagttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatccca |
372 |
Q |
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| T |
5150053 |
aacctaagttagcaagctgatctgcacaactattaccttctctatatatgtgagaaacattaaaattaaacatagataaaatgaatagacaattgtccca |
5150152 |
T |
|
| Q |
373 |
tctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagttatgccattctttgata |
472 |
Q |
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| T |
5150153 |
cctatttcttagagaccaaggcactattttagaagacttgaacgccaataaaactagcatggaatccgtttccaaccataggttgtgccagttcttaaca |
5150252 |
T |
|
| Q |
473 |
tgagctatctctattgctaccatagctgttataagtttagaattcaatgcagatgtaactccaaggttgattgagaacgcccctaagaagtcagaatctg |
572 |
Q |
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| T |
5150253 |
tgagcaatttcaattgctaccatagctgctataagttcagagtgaagagcagtagagactcccaagttaacggagaaagctcctagaaaatctgcatctg |
5150352 |
T |
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| Q |
573 |
aatttctaaagattcccccacaagctgcaagacctggatttccatgagctgcaccatcagtgttgcactttacccaattgaaaataggagg |
663 |
Q |
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| T |
5150353 |
agtttctaaaaattcctccacaagctgccaagcccggattaccctgcgctgccccgtcagtgttacacttaacccaattaaaaattggagg |
5150443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 185 - 546
Target Start/End: Original strand, 26448371 - 26448735
Alignment:
| Q |
185 |
ctataattaggaaatccagtcttattccttacaaattcaacattgacctaaggaggaacattgttgaaccaagaataagaag---aagttaagcctagat |
281 |
Q |
| |
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|||||||| ||||| | ||||| ||||| |||||||||||||| |||| |||||| | | ||||||||||||||||||||| |||||| |||| || |
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| T |
26448371 |
ctataattcggaaagtctgtcttgttcctaacaaattcaacattaacctgaggaggtatagtgttgaaccaagaataagaaggcaaagttagacctaaat |
26448470 |
T |
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| Q |
282 |
tagctagttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatcccatctattcct |
381 |
Q |
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| T |
26448471 |
tgacaagttgatctgcacaatgattgccttccctatatatatgagagaccttaaagttaaacctgcataaaagaaagagacaattatcccatctgtttct |
26448570 |
T |
|
| Q |
382 |
taaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagttatgccattctttgatatgagctatc |
481 |
Q |
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| T |
26448571 |
tagagaccaaggaacaatcttagatgatttaaaagccaagaaaacaagcatggagtctaattccaaccataagttaatccaatttttgacatctgctatt |
26448670 |
T |
|
| Q |
482 |
tctattgctaccatagctgttataagtttagaattcaatgcagatgtaactccaaggttgattga |
546 |
Q |
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| T |
26448671 |
tcaatagccaccatagctgcaataaatttagagtttaaagcagaagtgattccaagattaattga |
26448735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 365 - 499
Target Start/End: Complemental strand, 16187283 - 16187149
Alignment:
| Q |
365 |
ttatcccatctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagt-tatgccat |
463 |
Q |
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| T |
16187283 |
ttatcccatctattccttaaactccaaggaacaatcttagaagacttaaaagctagaaaaactaacattgaatctgtttctaacca-aagtctatgccaa |
16187185 |
T |
|
| Q |
464 |
tctttgatatgagctatctctattgctaccatagct |
499 |
Q |
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| T |
16187184 |
ttgttgatatgagctatctcaattgccaccatagct |
16187149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 6642983 - 6642917
Alignment:
| Q |
355 |
aaacaaacaattatcccatctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaa |
421 |
Q |
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| T |
6642983 |
aaacagacaattttcccatctatttcttaactgccaaggaactatttttaaagacttgaaggccaaa |
6642917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14722001 - 14722044
Alignment:
| Q |
1 |
tgctaaccccactaaatttgaccatctatgaacatcactttaca |
44 |
Q |
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| T |
14722001 |
tgctaaccccactaaatttgaccatctatgaacatcactttaca |
14722044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 289 - 443
Target Start/End: Complemental strand, 37926979 - 37926825
Alignment:
| Q |
289 |
ttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatcccatctattccttaaggac |
388 |
Q |
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|||||||||| |||||||||| |||| ||| ||||| || |||| || |||| |||||||| | | |||||||||||| ||||||||||| | || |
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| T |
37926979 |
ttggtctgcataatgattaccttccctataaatatgagacacatgaaacctaaatctagacaaaatatgcaaacaattatctcatctattcctaagacac |
37926880 |
T |
|
| Q |
389 |
caaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagttt |
443 |
Q |
| |
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| T |
37926879 |
caatgaactatcttaggtgacttgaatgccaagaaaactaacatggagtcagttt |
37926825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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