View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10209_low_3 (Length: 419)
Name: NF10209_low_3
Description: NF10209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10209_low_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 21 - 419
Target Start/End: Original strand, 28886363 - 28886761
Alignment:
| Q |
21 |
tttatcaaagacttcaaagaaggttcactagaaaacaaaggttggccaacaatcatgtctgcctatattatctcaaaagcagcaatgaattcttacacaa |
120 |
Q |
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| T |
28886363 |
tttatcaaagacttcaaagaaggttcactagaaaacaaagggtggccaacaatcatgtctgcctatattatctcaaaagcagccatgaattcttacacaa |
28886462 |
T |
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| Q |
121 |
gaattctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttga |
220 |
Q |
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| T |
28886463 |
gaattctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttga |
28886562 |
T |
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| Q |
221 |
ccaaggtgctgctagtgttgtgagattagcactgcttcctgatggttccccttctggcctcttctttattagggaagaaatatcaaacttttgaatggtt |
320 |
Q |
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| T |
28886563 |
ccaaggtgctgctagtgttgtgagattagctctgcttcctgatgattccccttctggcctcttctttattagggaagaaatatcaaacttttgaatggtt |
28886662 |
T |
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| Q |
321 |
ttatgaagtgtattacaatcatagaatgtgtctcttgctgatattttgtacccttgttaaattgttcactttttgcatgatcatagttcctatttgcca |
419 |
Q |
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| T |
28886663 |
ttatgaagtgtattacaattatagaatgtgtctcttgctgatattttgtacccttgttaaattgttcactttttgcatgatcatagttgctatttgcca |
28886761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 343
Target Start/End: Original strand, 28881582 - 28881904
Alignment:
| Q |
21 |
tttatcaaagacttcaaagaaggttcactagaaaacaaaggttggccaacaatcatgtctgcctatattatctcaaaagcagcaatgaattcttacacaa |
120 |
Q |
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| T |
28881582 |
tttatcaaagatttcaaagaaggttcactagaaaacaaagggtggccaaccttcttgtcaacctatattgtctcaaaagcagcaacaaattcttacacaa |
28881681 |
T |
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| Q |
121 |
gaattctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttga |
220 |
Q |
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| T |
28881682 |
ggattctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttatgtgaaaacagacctcaccaaaaacattggcatgttatctgttga |
28881781 |
T |
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| Q |
221 |
ccaaggtgctgctagtgttgtgagattagcactgcttcctgatggttccccttctggcctcttctttattagggaagaaatatcaaacttttgaatggtt |
320 |
Q |
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| T |
28881782 |
ccaaggtgctgctagtgttgtgagattagcactgcttcctgatggttccccttctggcctcttctttattagggaagaaatgtcaaacttttgaatggtt |
28881881 |
T |
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| Q |
321 |
ttatgaagtgtattacaatcata |
343 |
Q |
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| T |
28881882 |
ttattaaatgtattgcaaccata |
28881904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 11951315 - 11951091
Alignment:
| Q |
27 |
aaagacttcaaagaaggttcactagaaaacaaaggttggccaaca-atcatgtctgcctatattatctcaaaagcagcaatgaattcttacacaagaatt |
125 |
Q |
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| T |
11951315 |
aaagacttcaaacaaggttcacttgaaaacaagggttggccaacttatctt-tgtgcctataagctctcaaaagcagctgtgaattcatacacaaggctt |
11951217 |
T |
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| Q |
126 |
ctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttgaccaag |
225 |
Q |
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| T |
11951216 |
ctagcttatagacatccaaacttatgtattaattgtgtttgtccgggttttgttaaaacagatatgaatagaaacacaggtgatttatctgttgaaaatg |
11951117 |
T |
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| Q |
226 |
gtgctgctagtgttgtgagattagca |
251 |
Q |
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| T |
11951116 |
gtgctgctagtgttgttagattagca |
11951091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 12002824 - 12002745
Alignment:
| Q |
105 |
atgaattcttacacaagaattctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaac |
184 |
Q |
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| T |
12002824 |
atgaatgcttacacaagaattactgcaaagaagtatcctaacttctgcatcaattgtgtttgccctggttatgtcaaaac |
12002745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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