View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10209_low_4 (Length: 405)
Name: NF10209_low_4
Description: NF10209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10209_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 398
Target Start/End: Complemental strand, 16520609 - 16520233
Alignment:
| Q |
15 |
aaaaaagaatgacctctcatgaccaccgataatttgttttgtgttgcttacaaaggttatatggtcatttatgtaagcaacaagacagacatatacatcg |
114 |
Q |
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| T |
16520609 |
aaaaaagaatgacctctcatgaccaccgataatttgttgtgtgttgcttacaaaggttatatgatcatttatgtaagctacaagacagacatatacatcg |
16520510 |
T |
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| Q |
115 |
aagaacttaacagacatttcctaagattatattttttaaaacaannnnnnnnnnnnnngcaactccaaaagtgcaaaacatttaacattataaaatgatc |
214 |
Q |
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| T |
16520509 |
aagaacttaacagacatttcctaagattatttttttttaaacaattttttttt-----gcaactccaaaagtgcaaaacatttaacattataaaatgatc |
16520415 |
T |
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| Q |
215 |
atataatttcatttttattatatgcaaggagaataaacatgactaaatttctcaaattgatttatgctacgattcaccttcttttcctgtttcttgttgt |
314 |
Q |
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| T |
16520414 |
aaataatttcatttttattatatgcaaggagaataaacatgactaaatttctcaaattgatttatgctacgatttaccttcttttcttgtttcttgttgc |
16520315 |
T |
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| Q |
315 |
aactcactgcactgccaagggtaaagctcattttttcctttctaaatttcaactttttacttttatacacaacatttcttctct |
398 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
16520314 |
aactcactgcactgccaagggt-aagctcattttttcctttctaaattttaactttttacttttat-tacaacatttcttctct |
16520233 |
T |
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