View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10209_low_6 (Length: 307)
Name: NF10209_low_6
Description: NF10209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10209_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 3575897 - 3576176
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatacacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaa |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575897 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaa |
3575996 |
T |
|
| Q |
111 |
tggtgtgaaattcggcgaggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgca |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3575997 |
tggtgtgaaattcggcgaggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccacgca |
3576096 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggctgtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctct |
290 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576097 |
caaagtatccttgctatatgggctgtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctct |
3576176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 3585321 - 3585042
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatacacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaa |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || || || |||||||||||||| || |||||| ||||||| |
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| T |
3585321 |
cagagacatttgccaaaaaccgtgaactcgaggtcattcatagtagatgggctatgttgggtgccttaggatgtgtcttcccagaactcttggctcgcaa |
3585222 |
T |
|
| Q |
111 |
tggtgtgaaattcggcgaggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgca |
210 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3585221 |
tggtgtgaaattcggtgaggctgtgtggtttaaggcaggatctcaaatctttagtgagggtggacttgactacttgggtaacccaagcctagtccatgca |
3585122 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggctgtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctct |
290 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3585121 |
caaagcatccttgctatttgggctgtccaagttatcttaatgggagctgttgaaggttaccgtattgccggtggacctct |
3585042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 3563918 - 3564197
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatacacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaa |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||| |||||||| |||||||| |
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| T |
3563918 |
cagagacatttgccaaaaaccgtgaactcgaggtcatccacagtagatgggctatgttgggtgccttgggatgtgtcttccctgagctcttatctcgcaa |
3564017 |
T |
|
| Q |
111 |
tggtgtgaaattcggcgaggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgca |
210 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||| |
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| T |
3564018 |
tggtgtcaaattcggcgaggctgtatggttcaaggcaggatcccaaatttttagtgagggtgggcttgactacttgggtaacccaagtctagtccatgca |
3564117 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggctgtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
3564118 |
caaagcatccttgctatatgggctgtccaagttatcttaatgggtgctgttgagggttaccgtattgctggtggacctct |
3564197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 3569566 - 3569845
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatacacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||| |||||||| |||||||| |
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| T |
3569566 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtagatgggctatgttgggtgccttgggatgtgtcttccctgagctcttatctcgcaa |
3569665 |
T |
|
| Q |
111 |
tggtgtgaaattcggcgaggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgca |
210 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
3569666 |
tggtgtacaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgca |
3569765 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggctgtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctct |
290 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||| ||||||||||| |
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| T |
3569766 |
caaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgtattgctggtggacctct |
3569845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 290
Target Start/End: Original strand, 3572630 - 3572892
Alignment:
| Q |
28 |
aaccgtgaactcgaggtcatacacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaatggtgtgaaattcggcg |
127 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||| | |
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| T |
3572630 |
aaccgtgaactagaggtcattcacagtaggtgggctatgttgggagccttgggatgtgtcttccctgagctcttggctcgcaatggtgttaaattcggtg |
3572729 |
T |
|
| Q |
128 |
aggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgcacaaagcatccttgctat |
227 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
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|
| T |
3572730 |
aggccgtgtggttcaaggcaggatctcaaatctttagtgagggtggacttgactacttgggaaatccaagtctagtccatgcacaaagcatccttgctat |
3572829 |
T |
|
| Q |
228 |
atgggctgtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctct |
290 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
3572830 |
atgggctgtccaagttatcttaatgggtgctgttgagggttatcgtattgcaggtggacctct |
3572892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 290
Target Start/End: Original strand, 3577894 - 3578032
Alignment:
| Q |
152 |
ctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgcacaaagcatccttgctatatgggctgtccaagttatcttaat |
251 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||||||||| |
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| T |
3577894 |
ctcaaatctttagtgatggagggcttgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatttgggttgtcctagctatcttaat |
3577993 |
T |
|
| Q |
252 |
gggagctgttgagggttaccgtattgccggtggacctct |
290 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
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| T |
3577994 |
gggagctgttgagggttaccgtattgccgatggacctct |
3578032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 13275968 - 13276123
Alignment:
| Q |
135 |
gtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgcacaaagcatccttgctatatgggct |
234 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||| || || ||||| ||||| |||||||| || || |||||||||||||||||||| |||||||| |
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|
| T |
13275968 |
gtggttcaaggccaggtcccaaatctttagtgagggtgggctagactatttgggcaacccaagtcttgtacatgcacaaagcatccttgccatatgggcc |
13276067 |
T |
|
| Q |
235 |
gtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctct |
290 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
13276068 |
tgccaagttatcttgatgggtgctgttgagggttaccgtattgctggtggacctct |
13276123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 38356933 - 38357212
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatacacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaa |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| |
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| T |
38356933 |
cagagacattcgccaagaaccgtgaacttgaagtcatccatagtaggtgggctatgttgggagccttgggatgtgttttcccagagcttttgtctcgcaa |
38357032 |
T |
|
| Q |
111 |
tggtgtgaaattcggcgaggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgca |
210 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||| | |||||||| |
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| T |
38357033 |
tggtgttaaattcggtgaggctgtatggttcaaggccggatcccagatctttagcgagggtggacttgactacttgggtaacccaagtttggtccatgct |
38357132 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggctgtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctct |
290 |
Q |
| |
|
|| ||||| ||||| || |||||| |||||||||||| ||||| |||||||| |||||||||||||| ||||| ||||| |
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| T |
38357133 |
cagagcattcttgccatctgggctacccaagttatcttgatgggcgctgttgaaggttaccgtattgctggtggtcctct |
38357212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 42602831 - 42602953
Alignment:
| Q |
112 |
ggtgtgaaattcggcgaggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccatgcac |
211 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||| || | || ||||| |||||| || |||||||| ||||| ||||||| ||| ||||||| | |
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|
| T |
42602831 |
ggtgttaaattcggtgaggctgtgtggtttaaggctggtgcccagatcttctctgagggtggccttgactatttgggcaacccaaacctgatccatgctc |
42602930 |
T |
|
| Q |
212 |
aaagcatccttgctatatgggct |
234 |
Q |
| |
|
| ||||| ||||| || |||||| |
|
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| T |
42602931 |
agagcattcttgcaatctgggct |
42602953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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