View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10209_low_7 (Length: 248)

Name: NF10209_low_7
Description: NF10209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10209_low_7
NF10209_low_7
[»] chr2 (4 HSPs)
chr2 (12-248)||(28861650-28861886)
chr2 (89-200)||(28569264-28569375)
chr2 (97-147)||(36560038-36560088)
chr2 (97-145)||(22402307-22402355)
[»] chr5 (3 HSPs)
chr5 (107-224)||(16136084-16136201)
chr5 (89-147)||(31544060-31544118)
chr5 (97-189)||(25806429-25806521)
[»] chr3 (3 HSPs)
chr3 (97-220)||(27900224-27900347)
chr3 (88-205)||(23198925-23199042)
chr3 (97-189)||(3315660-3315752)
[»] chr4 (2 HSPs)
chr4 (97-147)||(16933042-16933092)
chr4 (97-189)||(5099872-5099964)
[»] chr7 (3 HSPs)
chr7 (89-178)||(6047814-6047903)
chr7 (97-175)||(24816229-24816307)
chr7 (97-175)||(44011714-44011792)
[»] chr1 (3 HSPs)
chr1 (97-147)||(28997485-28997535)
chr1 (97-147)||(29003201-29003251)
chr1 (97-189)||(16429946-16430038)
[»] chr6 (1 HSPs)
chr6 (89-118)||(11137399-11137428)
[»] chr8 (1 HSPs)
chr8 (97-189)||(41383706-41383798)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 28861650 - 28861886
Alignment:
Q  12 gcaaaggtgaaggtcgtgtctgtgatgaggtttcccaaagtcctagtgagtctggagagacattaggcactcatgattcgtctatagagacgttaaacac 111  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  28861650 gcaaaggtgaaggtcgtgtctgtgatgagtttttccaaagtcctagtgagtctggagagacgttaagcactcatgattcgtctatagagacgttaaacac 28861749  T
Q  112 tcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgatcagccttagagggggagggtaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||    
T  28861750 tcaacattaggttgaagaggcggtgctaaaaatactaaaggtcagtttagagaggtggaggtaagaaaactcatgatcggccttagaggtggaggttaca 28861849  T
Q  212 aggtgaaaggcatggtgatataaacatttggaagttg 248  Q
    ||||||||||||| |||||||| ||||||| ||||||    
T  28861850 aggtgaaaggcattgtgatatacacatttgaaagttg 28861886  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 28569375 - 28569264
Alignment:
Q  89 tcgtctatagagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgat 188  Q
    ||||||| ||||| |||||||||||||||| ||  || ||||||||||  ||||||||| | | || || |  ||||||||||||||||| ||||  |||    
T  28569375 tcgtctagagagatgttaaacactcaacatcagtctggagaggcggtgggaaaaatactcatgatcagtctgaagaggtggaggtaagaatactcgtgat 28569276  T
Q  189 cagccttagagg 200  Q
    || |||| ||||    
T  28569275 caacctttgagg 28569264  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 36560088 - 36560038
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatact 147  Q
    |||||||||||||||||||||| || ||| |||||||||| ||| ||||||    
T  36560088 agagacgttaaacactcaacatcagcttggagaggcggtggtaagaatact 36560038  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 22402307 - 22402355
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaata 145  Q
    |||||||||||||||||||||| || ||| |||||||||| ||| ||||    
T  22402307 agagacgttaaacactcaacatcagcttggagaggcggtggtaagaata 22402355  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 16136084 - 16136201
Alignment:
Q  107 aacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgatcagccttagagggggagg 206  Q
    |||||||||||| |  | ||||||| |||||||| ||||||||||||||   || ||||| | ||||||||  | ||| ||||| ||||||||| | |||    
T  16136084 aacactcaacatcatctcgaagaggtggtgctaagaatactaaaggtcgtactaaagaggcgaaggtaagagcaatcatgatcaaccttagaggtgaagg 16136183  T
Q  207 gtacaaggtgaaaggcat 224  Q
     |||||||||||||||||    
T  16136184 ttacaaggtgaaaggcat 16136201  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 31544060 - 31544118
Alignment:
Q  89 tcgtctatagagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatact 147  Q
    |||||||||||||||||||||||||||||| ||  || |||||||||| ||| ||||||    
T  31544060 tcgtctatagagacgttaaacactcaacatcagcctggagaggcggtggtaagaatact 31544118  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 25806429 - 25806521
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgatc 189  Q
    |||||||||||||||||||||| ||  || |||||||||| ||| |||||| | | || || |||||||| ||||| || || ||||| ||||    
T  25806429 agagacgttaaacactcaacatcagcctggagaggcggtggtaagaatactcatgatcagtctagagaggcggaggcaacaatactcatgatc 25806521  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 27900224 - 27900347
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgatcagcctta 196  Q
    ||||||||||||||| |||||| ||  || ||||||||||| || |||||| | || | |||| ||| || ||||||||||| |||||| |||| ||| |    
T  27900224 agagacgttaaacacccaacatcagtctggagaggcggtgcaaagaatactcagggccagtttggagtggcggaggtaagaatactcacaatcaacctaa 27900323  T
Q  197 gagggggagggtacaaggtgaaag 220  Q
    |||  ||||| |||||||| ||||    
T  27900324 gagatggaggttacaaggtaaaag 27900347  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 23199042 - 23198925
Alignment:
Q  88 ttcgtctatagagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacga 187  Q
    |||||||  |||||||||||||||||||||| ||  || |||||||||| | | |||||| | |||  || | ||||||||| ||||| || ||||| ||    
T  23199042 ttcgtctggagagacgttaaacactcaacatcagcctggagaggcggtggtgagaatactcatggttagtctggagaggtggtggtaacaatactcatga 23198943  T
Q  188 tcagccttagagggggag 205  Q
    ||| |||| |||| ||||    
T  23198942 tcaacctttgaggtggag 23198925  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 3315660 - 3315752
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgatc 189  Q
    |||||||||||||||||||||| ||  || |||||||||| ||| |||||| | | || || | |||||| ||||| ||||| ||||| ||||    
T  3315660 agagacgttaaacactcaacatcagcctggagaggcggtggtaagaatactcatgatcagtctggagaggcggaggcaagaatactcatgatc 3315752  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 16933092 - 16933042
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatact 147  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||| ||||||    
T  16933092 agagacgttaaacactcaacattagcttggagaggcggtggtaagaatact 16933042  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 5099872 - 5099964
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgatc 189  Q
    |||||| ||||||||||||||||||  || |||||||||| ||| |||||| | | || || | |||||||||||| || || ||||| ||||    
T  5099872 agagacattaaacactcaacattagcctggagaggcggtggtaagaatactcatgatcagtctggagaggtggaggcaaaaatactcatgatc 5099964  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 6047814 - 6047903
Alignment:
Q  89 tcgtctatagagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaa 178  Q
    ||||||| |||||||||||||||||||||| ||  || ||||||||||  || |||||| |||||| || |  ||||| |||||||||||    
T  6047814 tcgtctagagagacgttaaacactcaacatcagcctggagaggcggtggaaagaatactcaaggtcagtctgaagaggcggaggtaagaa 6047903  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 24816307 - 24816229
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaa 175  Q
    |||||||||||||||||||||| ||  ||||||| ||||| ||| |||||| | ||||  ||| |||||| ||||||||    
T  24816307 agagacgttaaacactcaacatcagcctgaagagacggtggtaagaatactcatggtcactttggagaggcggaggtaa 24816229  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 44011792 - 44011714
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaa 175  Q
    |||||||||||||||||||||| ||  || |||||||||| ||| |||||| | |||| || | |||||| ||||||||    
T  44011792 agagacgttaaacactcaacatcagcctggagaggcggtggtaagaatactcatggtcagtctggagaggcggaggtaa 44011714  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 28997535 - 28997485
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatact 147  Q
    |||||||||||||||||||||| ||  || |||||||||| ||||||||||    
T  28997535 agagacgttaaacactcaacatcagcctggagaggcggtggtaaaaatact 28997485  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 29003251 - 29003201
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatact 147  Q
    |||||||||||||||||||||| ||  || |||||||||| ||||||||||    
T  29003251 agagacgttaaacactcaacatcagcctggagaggcggtggtaaaaatact 29003201  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 16429946 - 16430038
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgatc 189  Q
    ||||| |||||||||||||||| || ||| |||||||||| ||| |||||| | |||| || | |||||| ||| |||| || ||||| ||||    
T  16429946 agagaagttaaacactcaacatcagcttggagaggcggtggtaagaatactcatggtcagtctggagaggcggatgtaacaatactcatgatc 16430038  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 11137399 - 11137428
Alignment:
Q  89 tcgtctatagagacgttaaacactcaacat 118  Q
    ||||||||||||||||||||||||||||||    
T  11137399 tcgtctatagagacgttaaacactcaacat 11137428  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 41383706 - 41383798
Alignment:
Q  97 agagacgttaaacactcaacattaggttgaagaggcggtgctaaaaatactaaaggtcggtttagagaggtggaggtaagaaaactcacgatc 189  Q
    |||||||||||||||||||||| ||  || |||||||||| ||| |||||| | | || |||| |||||| ||||| || || ||||| ||||    
T  41383706 agagacgttaaacactcaacatcagcctggagaggcggtggtaagaatactcatgatcagtttggagaggcggaggcaacaatactcatgatc 41383798  T

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