View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10209_low_9 (Length: 242)
Name: NF10209_low_9
Description: NF10209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10209_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 3611573 - 3611797
Alignment:
| Q |
18 |
cacaaccttaataaaattatagctttatgagctccatttattaccacatgtgtaccttattataatttattttcatcatttttacatatattnnnnnnnt |
117 |
Q |
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| T |
3611573 |
cacaaccttaataaaattatagctttatgagctccatttattaccacatgtgtaccttattttaatctcttttcatcatttttacatatattaaaaaaat |
3611672 |
T |
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| Q |
118 |
agataatattgtacctaaaaatgtattagataatgtgctttatgtgacaattttatgtatggatattcctgaaatattatgagtctagtaaggcttattt |
217 |
Q |
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||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3611673 |
agataatgttgtacctaaaaatatattagataatgtgttttatgtgacaattttatgtatggatattcctgaaatattatgagtctagtaaggcttattt |
3611772 |
T |
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| Q |
218 |
tagagtgttgatgggttatataaat |
242 |
Q |
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| T |
3611773 |
tagagtgttgatgggttatataaat |
3611797 |
T |
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