View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1020_high_6 (Length: 250)
Name: NF1020_high_6
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1020_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 21139000 - 21139102
Alignment:
| Q |
29 |
ctatctttatattatgttttgctttcctcaacaactatttttcttatgtatgtttttagcactatcatgctttttgaactagtaatttaaatgttaagta |
128 |
Q |
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| T |
21139000 |
ctatctttatattatgttttgctttcctcaacaactatttttcttatgtatgtttttagcacgatcatgctttttgaactagtaatttaaatgttaagta |
21139099 |
T |
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| Q |
129 |
ctg |
131 |
Q |
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||| |
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| T |
21139100 |
ctg |
21139102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 21139217 - 21139347
Alignment:
| Q |
120 |
tgttaagtactggtttacttatgctatcttctgtcgccaatatatactttaaatttaaattatttatattcatagtcgaaaataaacagaaaggggtgac |
219 |
Q |
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|||||||||||||||||| ||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |
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| T |
21139217 |
tgttaagtactggtttaccgatgttatcttctgtcgtcaatttatactttaaatttaaattatttaaattcatagtcgaaaataaatagaaagggctgac |
21139316 |
T |
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| Q |
220 |
tttaacattaaatcttatgatcaaatagttt |
250 |
Q |
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| T |
21139317 |
tttaacattaaatcatatgatcagatagttt |
21139347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 23437095 - 23437010
Alignment:
| Q |
31 |
atctttatattatgttttgctttcctcaacaactatttttcttatgtatgtttttagcactatcatgct--ttttgaactagtaat |
114 |
Q |
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||||||||||||| ||||||||| ||| |||||||||||||| |||||||| |||||| |||| |||| |||||||||||||| |
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| T |
23437095 |
atctttatattatattttgcttttctcttcaactatttttcttctgtatgttcttagcattatcctgctacatttgaactagtaat |
23437010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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