View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1020_low_10 (Length: 261)
Name: NF1020_low_10
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1020_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 26710954 - 26711164
Alignment:
| Q |
19 |
aacaaaggagatacataatcaaccaaatatataaagctatttccatgtcggcatctctatatcagtagctagaagtaagtcttccatggccactggtttt |
118 |
Q |
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| T |
26710954 |
aacaaaggagatacataatcaaccaaatatataaagctatttctatgtcggcacctctatatcagtagctagaagtaagtcttccatggccactggtttt |
26711053 |
T |
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| Q |
119 |
aaacacatt-----nnnnnnnnnnnnnnntgagtttagccgaataatatcattcttgaaatgatacataatgatagttaatataattttagccgaataat |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26711054 |
aaacacattaaaaaaataaaaaataaaaatgagtttagccgaataatatcattcttgaaatgatacataatggtagttaatataattttagccgaataat |
26711153 |
T |
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| Q |
214 |
attaaaaaact |
224 |
Q |
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||||||||||| |
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| T |
26711154 |
attaaaaaact |
26711164 |
T |
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